Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme51162g00001 GGAGAGATTCCAAAGGAATTGAGTCTAATTCCTTCATTAGAAATCTCTCTTAATCTTAGCTTTAACCATTTTTCTGGTGAAATTCCATCACAATTCTCTAGTCTTAGCAAACTAGGAGTGCTTGATCTCTCACATAACAAACTCTCAGGGAATTTAGATCCTCTATCTGACCTTCAAAACCTTGTTTCCTTAAATGTTTCATTCAATTCCTTCTCTGGTAAGTTACCTAACACTCCATTCTTCCATAAACTCCCTCTTAGTGATCTTGCCGAAAATGAAGGTCTTTACATTGCTCGAGATGATGTGATTCCTAATAATAGAATTGAAACCAAAAGTCATGAAAAATCTGTCATGAAATCTGTAATGTCCATTCTGTTAAGCACAAGTGCGGTACTCGTTCTGCTCACAGTCTATGTCTTGATCCGTTCGCATATGGCGAACAAATCACTTATGGAAAACGAAAGTTGGGAGGTGACTTTGTATCAAAAGTTTGAACTCTCCATCGATGACATTGTATTGAATTTAACATCATCCAATGTGATTGGCACCGGAAGTTCAGGAGTTGTGTACAAGGTAACAGTTCCAAACGGCGAAACACTTGCAGTTAAAAAGATGTGGTCATCAGAAGAGTCAGGAGCATTCAATTCTGAAATTCAAACCTTAGGATCAATCAGACACAAGAATATCATTAGGCTTCTTGGTTGGGGATCCAACAGAAACCTAAAGCTGCTGTTTTATGACTATCTTCCCAATGGAAGCCTTAGTTCATTACTTCATGGTTCTGGAAAGGGAAAAGCAGAATGGGAAACAAGATATGATGTTATATTAGGTGTGGCTCATGCACTTTCATATTTGCATCATGATTGTGTTCCTGCTATAATGCATGGAGATGTCAAAGCCATGAATGTGTTATTAGGTCATGGATATCAACCTTACCTTGCTGACTT 947 0.3812 GEIPKELSLIPSLEISLNLSFNHFSGEIPSQFSSLSKLGVLDLSHNKLSGNLDPLSDLQNLVSLNVSFNSFSGKLPNTPFFHKLPLSDLAENEGLYIARDDVIPNNRIETKSHEKSVMKSVMSILLSTSAVLVLLTVYVLIRSHMANKSLMENESWEVTLYQKFELSIDDIVLNLTSSNVIGTGSSGVVYKVTVPNGETLAVKKMWSSEESGAFNSEIQTLGSIRHKNIIRLLGWGSNRNLKLLFYDYLPNGSLSSLLHGSGKGKAEWETRYDVILGVAHALSYLHHDCVPAIMHGDVKAMNVLLGHGYQPYLAD 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme51162g00001 315 SUPERFAMILY L domain-like 3 97 - -
Trme51162g00001 315 Pfam Protein kinase domain 178 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme51162g00001 315 ProSiteProfiles Protein kinase domain profile. 175 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme51162g00001 315 Gene3D Transferase(Phosphotransferase) domain 1 249 315 - -
Trme51162g00001 315 PANTHER LEUCINE RICH REPEAT KINASE 2 1 315 - -
Trme51162g00001 315 Gene3D Ribonuclease Inhibitor 1 101 IPR032675 -
Trme51162g00001 315 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 144 248 - -
Trme51162g00001 315 Pfam Leucine rich repeat 16 70 IPR001611 GO:0005515
Trme51162g00001 315 SMART serkin_6 175 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme51162g00001 315 FunFam Putative LRR receptor-like serine/threonine-protein kinase 16 101 - -
Trme51162g00001 315 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672|GO:0006468
Trme51162g00001 315 ProSiteProfiles Leucine-rich repeat profile. 37 59 IPR001611 GO:0005515
Trme51162g00001 315 Gene3D Phosphorylase Kinase; domain 1 138 248 - -
Trme51162g00001 315 SUPERFAMILY Protein kinase-like (PK-like) 171 315 IPR011009 -
Trme51162g00001 315 ProSitePatterns Protein kinases ATP-binding region signature. 181 204 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme51162g00001 Trme-Chr51162 2 948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme51162g00001 1 80 Receptor kinase-like Gene Family AT5G56040 29.524 3.02e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme51162g00001 Pkinase 1.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme51162g00001 - - psat:127084696 537.724