Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme511355g00001 ATGTTATCGTGTGCTGGGGCAGATAGGTTGCAGACGGGGATGAGAGGTGCATTTGGGAAACCGTTAGGAACGTGTGCTAGGGTTAATATTGGTCAGGTGCTGTTGTCTGTTAGATGTAAGAATGGTAATGGTCATCATGCTCAAGAAGCTCTTCGTCGTGCTAAGTTTAAGTTCCCCGGTCGTCA 185 0.4757 MLSCAGADRLQTGMRGAFGKPLGTCARVNIGQVLLSVRCKNGNGHHAQEALRRAKFKFPGR 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme511355g00001 61 SUPERFAMILY Ribosomal protein L16p/L10e 1 61 IPR036920 GO:0003735|GO:0005840|GO:0006412
Trme511355g00001 61 CDD Ribosomal_L16_L10e 10 61 IPR016180 GO:0003735|GO:0005840|GO:0006412
Trme511355g00001 61 Pfam Ribosomal protein L16p/L10e 5 61 IPR016180 GO:0003735|GO:0005840|GO:0006412
Trme511355g00001 61 ProSitePatterns Ribosomal protein L10e signature. 7 28 IPR018255 GO:0003735|GO:0005840|GO:0006412
Trme511355g00001 61 Gene3D Ribosomal protein L10e/L16 1 61 IPR036920 GO:0003735|GO:0005840|GO:0006412
Trme511355g00001 61 PANTHER 60S RIBOSOMAL PROTEIN L10 1 61 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme511355g00001 Trme-Chr511355 1 185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme511355g00001 1 61 Cytoplasmic Ribosomal Protein Gene Family AT1G26910 91.803 1.10e-35 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme511355g00001 K02866 - vvi:100241995 122.479