Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme511061g00001 GCGACGGAGCGTCAATCCAAGAGTTGGAGCATCCATACCCGATCGGAGATCATCGCCAAGTACCAAATCATGGAACGAATCGGCTCCGGAGCTTACGCCGACGTCTACCGTGGCCGTCGTCTCTCCGACGACCTAACAGTTGCTCTCAAGGAAATCCACGACTACCAATCCGCTTTCCGAGAAATCGAAGCATTGCAAATGCTTCAAGGTTCTCCAAACGTCGTCGTCTTGCACGAATACTTCTGGCGTGAAGATGAAGACGCTGTTATCGTTCTCGAA 279 0.5197 ATERQSKSWSIHTRSEIIAKYQIMERIGSGAYADVYRGRRLSDDLTVALKEIHDYQSAFREIEALQMLQGSPNVVVLHEYFWREDEDAVIVLE 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme511061g00001 93 Pfam Protein kinase domain 21 93 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme511061g00001 93 ProSiteProfiles Protein kinase domain profile. 21 93 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme511061g00001 93 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Trme511061g00001 93 Gene3D Phosphorylase Kinase; domain 1 12 93 - -
Trme511061g00001 93 FunFam Cyclin-dependent kinase F-1 12 93 - -
Trme511061g00001 93 PANTHER CELL DIVISION PROTEIN KINASE 20 93 - -
Trme511061g00001 93 SUPERFAMILY Protein kinase-like (PK-like) 9 92 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme511061g00001 Trme-Chr511061 2 280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme511061g00001 3 93 Core Cell Cycle Gene Families AT4G28980 76.923 8.72e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Trme511061g00001 Pkinase 1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme511061g00001 - - gmx:100801952 169.088