Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme51079g00001 ATGGATCCACAACTTCTCTCCACCGCGGCAGCAACTACCATTCCACCTAATATCGTCCAACAAAATTATCCTGAATCGGTAGAGTCTTTATCATCACCATCACCACCACAGCCACCACCACGATCACGTGAAATAATGAACGATGAGTCTTTACCTAATGTCCCCGGATCCAAGCTTCGTCTCATGTGCAGCTATGGCGGACACATTATGCCGCGCCCGCATGATAAATCCTTGTGTTATGTCGGTGGTGACACGCGAATTGTGGTGGTTGACCGGAGTGCTTCCCTGAGAGATCTTTGTTCTCGTCTTTCGAGAACAATTCTTAATGGAAGACCCTTTACTCTAAAATACCAGCTTCCAAATGAAGACCTTGATAACCTCATCACAGTAACATCAGATGAAGATCTTGATAATATGATCGAAGAATACGATCGAATAGCATCTTCATCAATGAAACCTTCATCTTCAAGACTCAGAGTGTTTCTTTTCTTCACAAAACCAGATTCTACTCTTTCAATGGGTTCTCTACTTGATGATGCAAAATCTGAAACATGGTTTGTTGATGCACTCAACAACTCAGGAATCCTCTCAAGGGGTGTTTCAGATTCAGAACGGGATTCTTTTGTGAATCTTGATAATGTTCCTGCTAGTGATTCAAGTAACAACTTGGAATCTCAAGGTGTAGTAGCAGCAGAGTCATTGAATATCCTTGAAGACACCAACAACAATAACAACAATGTTAAGAATGTTTTTGATGTTGTTAATGTTGCACCTGGTTCACCTATGCTTGAGAATAGTCCATCTTCATCTTCTTTGTCTCCTTCTATAGCTAATTTACCTCCGATTCGTGTTCGTGTTGA 860 0.414 MDPQLLSTAAATTIPPNIVQQNYPESVESLSSPSPPQPPPRSREIMNDESLPNVPGSKLRLMCSYGGHIMPRPHDKSLCYVGGDTRIVVVDRSASLRDLCSRLSRTILNGRPFTLKYQLPNEDLDNLITVTSDEDLDNMIEEYDRIASSSMKPSSSRLRVFLFFTKPDSTLSMGSLLDDAKSETWFVDALNNSGILSRGVSDSERDSFVNLDNVPASDSSNNLESQGVVAAESLNILEDTNNNNNNVKNVFDVVNVAPGSPMLENSPSSSSLSPSIANLPPIRVRV 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme51079g00001 286 ProSiteProfiles PB1 domain profile. 58 163 IPR000270 GO:0005515
Trme51079g00001 286 SUPERFAMILY CAD & PB1 domains 74 174 - -
Trme51079g00001 286 Gene3D - 78 164 - -
Trme51079g00001 286 Pfam PB1 domain 74 163 IPR000270 GO:0005515
Trme51079g00001 286 PANTHER OS05G0427100 PROTEIN-RELATED 23 285 - -
Trme51079g00001 286 SMART PB1_new 73 163 IPR000270 GO:0005515
Trme51079g00001 286 CDD PB1_UP2 62 163 - -
Trme51079g00001 286 MobiDBLite consensus disorder prediction 1 30 - -
Trme51079g00001 286 MobiDBLite consensus disorder prediction 1 51 - -
Trme51079g00001 286 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 78 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme51079g00001 Trme-Chr51079 90 949 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme51079g00001 58 192 MAP Kinase Kinase Kinase AT5G57610 44.853 4.93e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme51079g00001 - - cam:101514979 379.022