Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme51077g00001 ATGCCAAATGGTACTTTGTATGATTCACTTCACAAGGGTTGGATTCATTTGGATTGGCCTACAAGGTATAGGATTGCACTTGGAATTGCTCAAGGTCTTGCATACCTTCACCATGATTTGGTTTTTCCTATTATCCATAGAGATATTAAGTCAACCAATATTCTCTTGGATGAAGATTACCATCCTAAGGTTGCTGATTTTGGGATTGCTAAGGTTTTACAAGCAAGAGGAGGAAAAGATTCCACAACCACTGTTATTGCAGGAACATATGGTTACCTAGCCCCAGAATATGCATATTCACCAAGGGCAACTACAAAGTGTGATGTGTATAGTTTTGGTGTGATTTTGATGGAATTGTTAACTGGTAGAAAGCCCATTGAATCTGAATTTGGAGAAAACAGAAACATAGTTTTTTGGGTTTCAAACAAAGTAGAAGGCAAAGAAGGAGCTAGACCAAGTGAAGTTTTTGATCCAAAGTTATCATGTTCATTCAAAGATGACATGGTTAAAGTTTTGAGGATTGCTATT 528 0.3712 MPNGTLYDSLHKGWIHLDWPTRYRIALGIAQGLAYLHHDLVFPIIHRDIKSTNILLDEDYHPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSPRATTKCDVYSFGVILMELLTGRKPIESEFGENRNIVFWVSNKVEGKEGARPSEVFDPKLSCSFKDDMVKVLRIAI 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme51077g00001 176 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 1 176 - -
Trme51077g00001 176 ProSitePatterns Serine/Threonine protein kinases active-site signature. 44 56 IPR008271 GO:0004672|GO:0006468
Trme51077g00001 176 Gene3D Transferase(Phosphotransferase) domain 1 1 176 - -
Trme51077g00001 176 Pfam Protein kinase domain 4 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme51077g00001 176 SUPERFAMILY Protein kinase-like (PK-like) 1 136 IPR011009 -
Trme51077g00001 176 ProSiteProfiles Protein kinase domain profile. 1 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme51077g00001 176 SMART serkin_6 1 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme51077g00001 176 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme51077g00001 Trme-Chr51077 1 886 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme51077g00001 1 176 Receptor kinase-like Gene Family AT5G49660 72.727 5.51e-85 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme51077g00001 Pkinase 6.9e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme51077g00001 - - gmx:100808284 335.88