Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5102g00001 GTTGTTAGAGTTGTTGTCTTGACACTTAAAAACCTGATGTCAAAAGGGACATTGGGTGCTCAGATGGTTGATCTTCAGCTGCCACAAGTTGTCCAAAGTTTGAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGACACTGAACTCTTTGGAAGAAGGGCTTAAGGATAATATCAAGAAACTAAGTTCTTTTGATAAGTACAAGCAAGAGGTTCTTCTCGGCAATCTGGATTGGTCTCCAATGCACAAAGATCCCATATTTTGGCGGGAAAATATAACCAATTTTGAAGAGCATGATTTCCAGATTCTAAGGGTCCTATTAACAATTTTGGACTCGTCCAATGATCCAAGGACTCTAGCTGTTGCTTGCTTTGACATTTCACAGTTCATCCAGTGCCATCCGGCTGGGCGGATCATTGTGACAGACCTTAAAGCAAAAGAACGTGTGATGAAACTAATGAATCATGAGAGTGCTGAGGTAACTAAAAATGCACTGCTCTGCATCCAACGACTTTTCTTGGGTGCAAAGTATGCGAGCTTCTTGCAGGTCTAG 555 0.4216 VVRVVVLTLKNLMSKGTLGAQMVDLQLPQVVQSLKAQAWSDEDLLETLNSLEEGLKDNIKKLSSFDKYKQEVLLGNLDWSPMHKDPIFWRENITNFEEHDFQILRVLLTILDSSNDPRTLAVACFDISQFIQCHPAGRIIVTDLKAKERVMKLMNHESAEVTKNALLCIQRLFLGAKYASFLQV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5102g00001 184 FunFam V-type proton ATPase subunit H 75 176 - -
Trme5102g00001 184 SUPERFAMILY ARM repeat 1 174 IPR016024 -
Trme5102g00001 184 Pfam V-ATPase subunit H 1 55 IPR004908 GO:0000221|GO:0046961|GO:1902600
Trme5102g00001 184 Gene3D - 1 63 IPR011989 -
Trme5102g00001 184 Pfam V-ATPase subunit H 61 173 IPR011987 GO:0000221|GO:1902600
Trme5102g00001 184 Gene3D - 75 176 IPR038497 -
Trme5102g00001 184 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 183 IPR004908 GO:0000221|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5102g00001 Trme-Chr5102 166 1859 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5102g00001 1 183 Primary Pumps ATPases(2) AT3G42050 80.874 2.08e-107 313