Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme50944g00001 ATGATAAAGCTGGAGAAGGACCCTCATGCTGCATTTGCATTAATTATTGATGGAAAAACTCTGACATACACTTTAGAAGATGACCTGAAGCACCAATTTTTGAATCTGGCAGTTGATTGTGCATCTGTCATCTGCTGTCGTGTGTCTCCCAAGCAAAAGGCACTGGTCACGAGGTTGGTAAAAGAAGGAACTGGGAAGACCACTCTTGCAATAGGTGATGGTGCAAATGATGTTGGCATGATACAGGAAGCAGATATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGATGACTTATCAAACCTTTTCTGATAGTTGTCTTGCGATTGGTGCTGCTAATCCAATGCAAGAGTAA 357 0.4258 MIKLEKDPHAAFALIIDGKTLTYTLEDDLKHQFLNLAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQMTYQTFSDSCLAIGAANPMQE 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme50944g00001 118 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 6 99 - -
Trme50944g00001 118 Pfam haloacid dehalogenase-like hydrolase 65 89 - -
Trme50944g00001 118 Gene3D - 2 109 IPR023214 -
Trme50944g00001 118 NCBIfam HAD-IC family P-type ATPase 43 103 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme50944g00001 118 SUPERFAMILY HAD-like 5 98 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme50944g00001 Trme-Chr50944 128 848 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme50944g00001 1 97 Primary Pumps ATPases AT1G72700 93.814 4.76e-59 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme50944g00001 K01530 - atr:18443605 190.66