Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme50891g00001 ATGACCCAACAACTAACCGAAAAGAGTGATGTATACAGTTTCGGTGTAGTTATGCTTGAACTGATAACATCCAAACAACCACTCGAAAAAGGTAAGTACATCGTTCGAGAGGTTCGAACCTTAATGAACAACAGAGATGAAGAGTATTATGGTATAAGGGAACTAATGGATCCAGTGGTGAGAAACACAGTGAACCTCACAGGATTCGGGAGGTTTGTAGAGTTAACAATGCAATGCTTGGAAGAATCGGCTTCAGCCCGTCCAACAATGAGTGAAGTTGTGAAAGCATTAGAAACTATATTACAAAATGATGGAATGAATACAAATTCTACTTCTGCTTCTTCATCTGCCAATGACTTTGGAGTTACTAAGGGTGGTGCTGCAATGAGACATCCTTACATTGATAATACTTTTACTAAGAAGGATGAAGTTATTGAGAGTAATGAATTTGATTACAGTGGAGG 464 0.3858 MTQQLTEKSDVYSFGVVMLELITSKQPLEKGKYIVREVRTLMNNRDEEYYGIRELMDPVVRNTVNLTGFGRFVELTMQCLEESASARPTMSEVVKALETILQNDGMNTNSTSASSSANDFGVTKGGAAMRHPYIDNTFTKKDEVIESNEFDYSGG 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme50891g00001 155 Gene3D Transferase(Phosphotransferase) domain 1 1 123 - -
Trme50891g00001 155 SUPERFAMILY Protein kinase-like (PK-like) 2 106 IPR011009 -
Trme50891g00001 155 PANTHER OS01G0253100 PROTEIN 1 105 - -
Trme50891g00001 155 ProSiteProfiles Protein kinase domain profile. 1 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme50891g00001 155 Pfam Protein tyrosine and serine/threonine kinase 3 97 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme50891g00001 Trme-Chr50891 274 737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme50891g00001 2 155 Receptor kinase-like Gene Family AT1G79620 51.875 5.45e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trme50891g00001 PK_Tyr_Ser-Thr 6.4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme50891g00001 - - cam:101498992 247.284