Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme50821g00001 ATGGACTATCCAGAACAACCCACTTTCATTGTTTTGAGGCCCGAGAAAAGATTCAAGTTAGAAAACCTCACACCTTCAACTGAGTACTCTTGCAAAGCTTCTATTTTCAGCAGCACAGGGATTTTGGGTGCAGCAGAAGCTAAATGGGTGACACCTTGTCAACCACCTTCAAAAATTATTCGACATATTGCAACCCATTCAACTATTAACACATGTGCACAAAACCATTCAACTATCAGGGAAAGGTTTGAAAATTTCCTCACCAAGTCCCCAACGATAGAACCTTTTTCATATAAAAGTTTTGCAGCAGTTCCACCTGCCACACCTTCTAAATCCAATGAAATGAGACAACTTACTGGTTTGAATTCTAGAAAGAGCGTGAAAGAAAATGATTACGAGTATTCTGTGAGGGTAGTCAAATGGTTAGAGCATCAAGGGCACATAGACGAAATCTTCAGAGTGAAGTTTCTAACATGGTTCAGTCTCAAGGCTAATCAGCAAGAGAGAAGGGTGGTTAGTGCTTTTATTGATGCATTGATTGATGAACCTGCAAGCTTAGCAGACCAGCTAATACACACTTTCACCGACGAAATTTGTCGCGACCAAAAATCTTAG 615 0.4033 MDYPEQPTFIVLRPEKRFKLENLTPSTEYSCKASIFSSTGILGAAEAKWVTPCQPPSKIIRHIATHSTINTCAQNHSTIRERFENFLTKSPTIEPFSYKSFAAVPPATPSKSNEMRQLTGLNSRKSVKENDYEYSVRVVKWLEHQGHIDEIFRVKFLTWFSLKANQQERRVVSAFIDALIDEPASLADQLIHTFTDEICRDQKS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme50821g00001 204 PANTHER VIN3-LIKE PROTEIN 2-RELATED 2 68 IPR044514 GO:0010048|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme50821g00001 Trme-Chr50821 262 876 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme50821g00001 129 198 PHD Gene Family AT3G24440 50.000 2.49e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme50821g00001 - - gmx:100820128 305.449