Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5081g00001 AGGGGGAGGGATGGATACGAGTTTAAATTTATTGAGGGTATCACTAGGGATGTCTATAGCATGATTTATCGTGTATCTTTACACGTTGCTGATTATCCAGTTGGATTGGAGTCTCGAGTAGATAAAGTAAAGTCACTTTTGAATCTTGAGTCTGATGATGTAGTCCTCATGGTAGGCATCCACGGTATCGGTGGAATTGGTAAAACTACAATTGCTCGGGCAGTATATAATTCAATTGGTTACCAATTTGGAGGTCTGTGTTTTCTCGAGGATGTCAGAGAGAATTCCATGAAATTTGGTATAGTACATCTCCAAGAGACTATGCTTTCTAAGATATACGAAAATGGGGATTTTGACATACCCAATGTGGAAGAAGGAATTTCAGAGATGAGGAAGATGCTCCACCGAAAAAAGGTTCTATTGGTTCTTGACGATGTTGACAATATGGAGCAGCTTAAAGCTATTGCAGGAGCATCTGATTGGTTTGGTCTTGGCAGCAGAGTCATCATTACAACTAGGGACAATAGTTTGCTAGCAAAGCATTGGGTTGGATTTGGAAAAACATATCAGGTAGAGGAATTAAGCGAAAAAGAAGCTCTTGATTTGCTTAGCTGGTATGCTTTCAAGACCGACAAACTAGTTGATGCAAGCTATACACCAGTTTTAAAACGTGCATTGGCCTATGCTTCTAAGCTTCCACTGGCTTTGCAAGTAGTCGGCTCCAACTTGTTTAAAAAAAGTATTAACGAATGGAATTATGCATTGGATCAGTATGAAAAGATTCCTGATAAAAATATCCATAGCGTACTCAAGTTAAGCTTTGACTCCTTGGAGGAAGAAGAGCAGAAAATTTTTCGTGATATTGCTTGTTTCTTCAATGGACATAAATTGGCAGAAGTGGAAGACATACTCACGGCTCATTATGCTTTACCTGTGAAAGATAGTATAGGAGTGTTGATTGATAGATCTCTCATAAAGATTGATGATGATCTTGTGACATTACATGACTTGATACAAGACATGGGTAGAGAAATTGTTCGGCAGGAATCACCAGATGAGCCTGGAAAACGTAGTAGATTATGGCTTCCCCAAGACGTAGTTCAAGTTTTACTAGAAAAATCGGGTTCTAGTACAATTGAAAGCTTATTACTGGATTTCCCCAATGATGAAATAAACTCAAATGGCGAAGAAGTAAATTGGGACGGAGAGGCCTTAAGGAATATGCAAAACCTCAAAACACTTGTTATTAGAAAAGGTCGTTTTAAGAAAGGCCCCACACATCTTCCCAATAGTTTAAAAGTGTTGGAATGGTGGGGGTATCCTTCATCGTCATTACCAGATAATTTTCATCCAAAGAAACTGGTGATACTCAAGTTACCTGAAAGTTGCCTAAGCATAAGTGAACCGATTCAGGCAAGGTTTCAAAAGCCTGACAGTTTTGGATTTCAGCAACTGTGA 1458 0.3903 RGRDGYEFKFIEGITRDVYSMIYRVSLHVADYPVGLESRVDKVKSLLNLESDDVVLMVGIHGIGGIGKTTIARAVYNSIGYQFGGLCFLEDVRENSMKFGIVHLQETMLSKIYENGDFDIPNVEEGISEMRKMLHRKKVLLVLDDVDNMEQLKAIAGASDWFGLGSRVIITTRDNSLLAKHWVGFGKTYQVEELSEKEALDLLSWYAFKTDKLVDASYTPVLKRALAYASKLPLALQVVGSNLFKKSINEWNYALDQYEKIPDKNIHSVLKLSFDSLEEEEQKIFRDIACFFNGHKLAEVEDILTAHYALPVKDSIGVLIDRSLIKIDDDLVTLHDLIQDMGREIVRQESPDEPGKRSRLWLPQDVVQVLLEKSGSSTIESLLLDFPNDEINSNGEEVNWDGEALRNMQNLKTLVIRKGRFKKGPTHLPNSLKVLEWWGYPSSSLPDNFHPKKLVILKLPESCLSISEPIQARFQKPDSFGFQQL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5081g00001 485 Gene3D Ribonuclease Inhibitor 348 485 IPR032675 -
Trme5081g00001 485 PRINTS Disease resistance protein signature 406 422 - -
Trme5081g00001 485 PRINTS Disease resistance protein signature 133 147 - -
Trme5081g00001 485 PRINTS Disease resistance protein signature 57 72 - -
Trme5081g00001 485 PRINTS Disease resistance protein signature 229 243 - -
Trme5081g00001 485 Gene3D - 193 278 IPR042197 -
Trme5081g00001 485 Pfam NB-ARC domain 37 266 IPR002182 GO:0043531
Trme5081g00001 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 288 IPR027417 -
Trme5081g00001 485 Gene3D - 22 183 IPR027417 -
Trme5081g00001 485 SUPERFAMILY L domain-like 347 465 - -
Trme5081g00001 485 SUPERFAMILY "Winged helix" DNA-binding domain 265 370 IPR036390 -
Trme5081g00001 485 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 464 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5081g00001 Trme-Chr5081 61 1909 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5081g00001 34 464 WRKY Transcription Factor Family AT5G45050 32.895 4.66e-57 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5081g00001 - - mtr:25501119 544.273