Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme50777g00001 TGTATTATGTTTGACTGGCAAGGCACTATACGAATGCTACGTTGTACATTGTTCTTGAAGCCACAGTCTCAAGCTAATTTTGTAGGGAGTGGCAGCGGTAATGAATATGTGTATTCACCATCAGAGCCAGGTGGAGTAAATAGTTCAAGATCGTGGTTCACATATGAAGAACTTATCCAAGCTACAAATGGGTTTTCAGAGCAGAATAAATTGGGAGAAGGTGGATTTGGTTGCGTCTACAAAGGTTTGCTCATAGATGGAAGAGAAGTAGCTGTGAAACAGCTTAAAATTGGTGGTGGGCAAGGGGAACGTGAATTCAGAGCAGAAGTTGAGACTATTAGTCGAGTACATCATCGTCATCTGATTTCTTTGGTTGGTTACTGTATATCTGAGCATCAAAGATTGCTTGCCTATGACTATGTTCCTAACAATACTCTTCATTACCATCTACATGGTAAGATTCATACCTGCGATTAA 477 0.4025 CIMFDWQGTIRMLRCTLFLKPQSQANFVGSGSGNEYVYSPSEPGGVNSSRSWFTYEELIQATNGFSEQNKLGEGGFGCVYKGLLIDGREVAVKQLKIGGGQGEREFRAEVETISRVHHRHLISLVGYCISEHQRLLAYDYVPNNTLHYHLHGKIHTCD 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme50777g00001 158 Gene3D Phosphorylase Kinase; domain 1 24 140 - -
Trme50777g00001 158 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 41 153 IPR047117 -
Trme50777g00001 158 FunFam Proline-rich receptor-like protein kinase PERK8 37 140 - -
Trme50777g00001 158 ProSiteProfiles Protein kinase domain profile. 65 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme50777g00001 158 Pfam Protein tyrosine and serine/threonine kinase 68 153 IPR001245 GO:0004672|GO:0006468
Trme50777g00001 158 SUPERFAMILY Protein kinase-like (PK-like) 42 153 IPR011009 -
Trme50777g00001 158 ProSitePatterns Protein kinases ATP-binding region signature. 71 93 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme50777g00001 Trme-Chr50777 285 851 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme50777g00001 30 152 Trihelix Transcription Factor Family AT5G38560 75.610 2.14e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trme50777g00001 PK_Tyr_Ser-Thr 4.1e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme50777g00001 - - gmx:100784873 264.233