Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme50767g00001 GCTGGAATTCCAGATGGAGTACTCAATGTAGTACCTGGATTTGGTCAAACTGCAGGAGCTGCAATAAGCTCGCACATGGACATTGATAAGGTTAGTTTTACCGGTTCGACCGAAGTAGGACGCGAAATAATGATATCGGCAGCTAGAAGTAATTTGAAACCAGTTTCACTTGAATTAGGAGGAAAATCACCCATCTTAATATTCGATGATGCTGATGTTGATAAAGCTGCTGAGCTTGCTCTCTCAGGCATCGTATTTAATAAGGTGNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNCATGTCGTTACGTGCTCTTCCACGCGATCTTTACTACATGTTGA 357 0.3697 AGIPDGVLNVVPGFGQTAGAAISSHMDIDKVSFTGSTEVGREIMISAARSNLKPVSLELGGKSPILIFDDADVDKAAELALSGIVFNKVXXXXXXXXXXXXXXXXCRYVLFHAIFTTC 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme50767g00001 118 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 57 64 IPR029510 GO:0016491
Trme50767g00001 118 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 1 88 - -
Trme50767g00001 118 Pfam Aldehyde dehydrogenase family 1 87 IPR015590 GO:0016491
Trme50767g00001 118 SUPERFAMILY ALDH-like 1 87 IPR016161 GO:0016491
Trme50767g00001 118 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 63 88 IPR016163 GO:0016620
Trme50767g00001 118 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 1 62 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme50767g00001 Trme-Chr50767 242 686 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme50767g00001 1 88 Aldehyde Dehydrogenase Gene Family AT3G24503 78.409 2.03e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme50767g00001 K12355 - gmx:100783920 157.918