Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme507466g00001 GAGTTGCTCTCCCAACTTCGCCACATTCACTTGGTGTCCCTTGTGGGATATTGCAACGACAACACGGAGATGATTCTGCTTTATGAGTTCATGCATCACGGTACTCTCTGCGAGTATCTTTATGGTTCTGATAACCAACCCCTACCGTGGAAGCAGAGGCTTGAGATTCTATTGGGTGCTGCGAGAGGGCTACGTTATCTTCATGATGAGGTGAAGCACAAGATAATACATCGTGACGTGAAGAGCACCAACATATTGTTGGATGAGAAATGGGTGGCTA 280 0.4679 ELLSQLRHIHLVSLVGYCNDNTEMILLYEFMHHGTLCEYLYGSDNQPLPWKQRLEILLGAARGLRYLHDEVKHKIIHRDVKSTNILLDEKWVA 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme507466g00001 93 ProSiteProfiles Protein kinase domain profile. 1 93 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme507466g00001 93 PANTHER OS07G0166700 PROTEIN 1 93 IPR045272 GO:0004714|GO:0006468
Trme507466g00001 93 ProSitePatterns Serine/Threonine protein kinases active-site signature. 75 87 IPR008271 GO:0004672|GO:0006468
Trme507466g00001 93 SUPERFAMILY Protein kinase-like (PK-like) 2 92 IPR011009 -
Trme507466g00001 93 Gene3D Transferase(Phosphotransferase) domain 1 32 93 - -
Trme507466g00001 93 Gene3D Phosphorylase Kinase; domain 1 1 31 - -
Trme507466g00001 93 Pfam Protein tyrosine and serine/threonine kinase 2 90 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme507466g00001 Trme-Chr507466 1 280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme507466g00001 1 93 Receptor kinase-like Gene Family AT3G51550 70.968 2.00e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trme507466g00001 PK_Tyr_Ser-Thr 9.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme507466g00001 - - mtr:25497555 186.808