Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme50650g00001 AAGGAGAATCCTAACAACAAATCCGTCGCTGTGGTTGGGAAAGCTGGCGGAAAAGAATGGAAGGTGATGACTGCTGCGGACAAGGCTCCGTACATTGCCACTGCTGAGAAGAAGAAGGAAGAGTACGAGAAGGCTATTCGTGCTTACAACCTTGGCTTGGATGAGGATGATGAGTAG 177 0.4915 KENPNNKSVAVVGKAGGKEWKVMTAADKAPYIATAEKKKEEYEKAIRAYNLGLDEDDE 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme50650g00001 58 Gene3D High mobility group box domain 1 51 IPR036910 -
Trme50650g00001 58 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 52 IPR031061 -
Trme50650g00001 58 SUPERFAMILY HMG-box 2 52 IPR036910 -
Trme50650g00001 58 Coils Coil 32 52 - -
Trme50650g00001 58 Pfam HMG (high mobility group) box 1 50 IPR009071 -
Trme50650g00001 58 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 1 50 IPR009071 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trme50650g00001 HMG_box 1.2e-11 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme50650g00001 K25507 - gmx:100499992 80.4925