Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme50602g00001 ATGGAAGAAAGTTCATGGAAGACACAGAAAGAAGGTTCGTCAAGTTTACCATCCCATTTGTGCCGCTATTTTACAATAGCGGAGATAAGAGCTGCTACAAACAACTTTGAAGATATTTTTATCATTGGGGTTGGAGGGTTCGGCAACGTGTACAAAGGTTACATTGACGGAGTTACACCTGTTGCGATAAAACGTCTTAAACCGGGTTCTCAGCAGGGTGTAAATGAGTTCATGAATGAGATCGAGTTACTCTCTCAGCTTCGTCATATCCATTTGGTTTCCCTCATTGGATATTGCAACGAAG 304 0.4178 MEESSWKTQKEGSSSLPSHLCRYFTIAEIRAATNNFEDIFIIGVGGFGNVYKGYIDGVTPVAIKRLKPGSQQGVNEFMNEIELLSQLRHIHLVSLIGYCNE 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme50602g00001 101 Gene3D Phosphorylase Kinase; domain 1 1 101 - -
Trme50602g00001 101 ProSitePatterns Protein kinases ATP-binding region signature. 42 64 IPR017441 GO:0005524
Trme50602g00001 101 FunFam receptor-like protein kinase FERONIA 1 101 - -
Trme50602g00001 101 Pfam Protein tyrosine and serine/threonine kinase 42 100 IPR001245 GO:0004672|GO:0006468
Trme50602g00001 101 SUPERFAMILY Protein kinase-like (PK-like) 10 100 IPR011009 -
Trme50602g00001 101 ProSiteProfiles Protein kinase domain profile. 36 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme50602g00001 101 PANTHER OS07G0166700 PROTEIN 21 101 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme50602g00001 Trme-Chr50602 9 312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme50602g00001 5 101 Receptor kinase-like Gene Family AT3G51550 65.000 9.75e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trme50602g00001 PK_Tyr_Ser-Thr 2.4e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme50602g00001 - - tpra:123888472 175.637