Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5056g00001 ATGGCATCAAGATCCTATGCTAATCTCTTAGACTTAGCTGGTGGAGGAGACTTCCTTGATAATATTCCTCACACCCCAAGAACTCTTCCAAGGGTTATGACTGTTCCTGGAATTATTTCCGACCTGGATGGTGATTCAGATGTTAGTTCTTCTGGATGTCGGGAGCGGAAAATCATCGTGGCAAACATGTTGCCACTGCAGGCTAAAAGAGATATAGAAACTGGTAAATGGTGTTTCAGTTGGGACGAGGATTCAATTCTATTACAATTAAAAGATGGTTTTTCTTCTGATACTGAGGTAATCTATGTGGGTTCCCTCAAGGTGGAGATAGATACGGGTGAGCAGGATGCAGTTGCTCAGAAATTACTGGATGACTTTAATTGTGTGCCCACCTTTCTACCCCATGAGCTGCAGAAAAAGTTCTATCTTGGTTTTTGTAAGCAGCAGCTCTGGCCTCTCTTTCATTATATGCTACCTATATGCTCAGATCACGGTGATCGCTTTGACCGCGCGCTTTGGCAGGCTTATGTTTCTGCAAACAAAATATTTGCAGACAAAGTCATGGAAGTGATCAATCCTGATGATGATTTTGTTTGGGTTCATGACTACCATTTGATGGTTTTGCCTACTTTCTTGAGGAAACGATTTAATCGAGTTAAACTTGGGTTTTTTCTTCATAGTCCTTTCCCGTCGTCTGAAATTTACCGGACTTTGCCAGTAAGGGATGAAATCCTGAAGGGATTGTTGAATTCGGATTTAATTGGTTTTCATACATTTGACTATGCTCGCCACTTTCTTTCTTGCTGCAGTAGAATGCTAGGTCTGGACTATGAATCTAAGCGCGGACATATAGGACTTGATTACTTCGGCCGCACTATATTTATCAAAATTTTGCCTGTAGGCATTCACATGGGTAGGCTTGAATCTGTATTAAATCTTCCTTCTACATCCTCTAAACTAAAAGAGATTCAGGAAGAGTTTAAGGATAAGAAAGTTATTCTGGGTGTTGACGACATGGATATTTTTAAGGGTATCAATCTGAAGTTTCTAGCTGTGGAGCAGCTGCTGCAGCAGAAGCCAGATTTGCAGGGTCAAGTTGTCCTAATTCAAGTTGTAAATCCTGCAAGGGGTTCAGGGAAGGATGTTCAGGAAGCAAAGAAGGAAGCATATTCAATTGCTCAAAGGATCAATGATAGATATGGTTCAAATGATTATCAGCCAGTCATTATAATTGACCGTCACGTTCCTCGTTTTGAGAAGAGTGCCTATTATGCTGTTG 1279 0.4105 MASRSYANLLDLAGGGDFLDNIPHTPRTLPRVMTVPGIISDLDGDSDVSSSGCRERKIIVANMLPLQAKRDIETGKWCFSWDEDSILLQLKDGFSSDTEVIYVGSLKVEIDTGEQDAVAQKLLDDFNCVPTFLPHELQKKFYLGFCKQQLWPLFHYMLPICSDHGDRFDRALWQAYVSANKIFADKVMEVINPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDEILKGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVLNLPSTSSKLKEIQEEFKDKKVILGVDDMDIFKGINLKFLAVEQLLQQKPDLQGQVVLIQVVNPARGSGKDVQEAKKEAYSIAQRINDRYGSNDYQPVIIIDRHVPRFEKSAYYAV 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5056g00001 426 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 49 308 - -
Trme5056g00001 426 Gene3D Glycogen Phosphorylase B; 45 315 - -
Trme5056g00001 426 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 30 426 IPR001830 GO:0003824|GO:0005992
Trme5056g00001 426 Gene3D Glycogen Phosphorylase B; 316 426 - -
Trme5056g00001 426 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 56 425 - -
Trme5056g00001 426 Pfam Glycosyltransferase family 20 56 425 IPR001830 GO:0003824|GO:0005992
Trme5056g00001 426 CDD GT20_TPS 56 426 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5056g00001 Trme-Chr5056 856 2134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5056g00001 1 426 Trehalose Biosynthesis Gene Families AT1G23870 77.083 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5056g00001 K16055 - gmx:100775779 763.837