Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme50543g00001 ATGATTGTATTGATTCCTAGGAACACTACTATACCTGTCAAGAAGACAGACCAATGTACTACAGCTACGGACAAGCAATCTTCTGCCTTAATCAGGGTTTATGAGGGGGAGAGAACTAGAGCCAGTGACAACAATCTGCTTGGTTATTTTCGTCTCTCTGGGTTGCCATCCGCACTTCGTGGCCATCCTATTGAGGTGTGTTTTGCTGTTGATGAAAATGGCATTTTGACAGTCGCTGCCAAGGAAGTTTCCACTGGCAATACAAATGAGATTATAATAACCAATTACAGAGAAAGATTATCAGCAGAAGAAATTAAAAAATTGATTCAAGAAGCTGAGAATTACCGTGCTGAAGATGAAAAATTCCAACAAATGGCTCAAGTAAAGAATGCATTGGATCTCTGTGTTTATAAAATTGAAACTGCTTTAAAGAAGCAGAATATTAAGTTGAAGCTCTCCACACTAGAGAAAAAAAAGATCCAGGCTGCAATTACAAAGGCCAGAAATTTGATTGGTGAGAACCACCAGCATGAATTAGATGTTCTTGAGGATCATTTGAAGGAGCTCCAAAGTATGTTTGAAAACACTTTAGCCAATATTGGTTAG 606 0.3845 MIVLIPRNTTIPVKKTDQCTTATDKQSSALIRVYEGERTRASDNNLLGYFRLSGLPSALRGHPIEVCFAVDENGILTVAAKEVSTGNTNEIIITNYRERLSAEEIKKLIQEAENYRAEDEKFQQMAQVKNALDLCVYKIETALKKQNIKLKLSTLEKKKIQAAITKARNLIGENHQHELDVLEDHLKELQSMFENTLANIG 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme50543g00001 201 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 128 194 IPR029048 -
Trme50543g00001 201 Coils Coil 98 125 - -
Trme50543g00001 201 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 1 128 IPR029047 -
Trme50543g00001 201 Pfam Hsp70 protein 3 196 IPR013126 GO:0005524|GO:0140662
Trme50543g00001 201 PANTHER HEAT SHOCK PROTEIN 70KDA 1 166 IPR013126 GO:0005524|GO:0140662
Trme50543g00001 201 Gene3D - 129 200 IPR029048 -
Trme50543g00001 201 Coils Coil 172 199 - -
Trme50543g00001 201 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 1 133 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme50543g00001 Trme-Chr50543 278 883 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme50543g00001 1 200 Calmodulin-binding Proteins AT3G12580 49.751 1.58e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme50543g00001 K03283 - mtr:11425948 284.263