Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme50397g00001 CTACTCATATTTGACAACATAGAAAATGGAAGCTTAAAGGAACATCTCAATGACCCCTTGAAGACTCCCTTAAATTGGAGGACGAGGTTGCAGATTGCTAATGGTGTTGTGGCTGCACTGGAGTACTTATTTCTTTTCAGTGAACCACCAATAAGTCATGTCTCTATCAGCTCTAGCAATATTATGTTAGATGAGAACTTCACCCCAAAACTATCTGATTTTGGCCTTCTTACTGGTGGAAGTTCTGTCTTGACACCACCATACTCCCAAGGTAACTTCTCTTAG 285 0.407 LLIFDNIENGSLKEHLNDPLKTPLNWRTRLQIANGVVAALEYLFLFSEPPISHVSISSSNIMLDENFTPKLSDFGLLTGGSSVLTPPYSQGNFS 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme50397g00001 94 PANTHER OS01G0253100 PROTEIN 1 77 - -
Trme50397g00001 94 FunFam Protein kinase superfamily protein 7 94 - -
Trme50397g00001 94 Gene3D Transferase(Phosphotransferase) domain 1 1 91 - -
Trme50397g00001 94 Pfam Protein tyrosine and serine/threonine kinase 2 77 IPR001245 GO:0004672|GO:0006468
Trme50397g00001 94 ProSiteProfiles Protein kinase domain profile. 1 94 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme50397g00001 94 SUPERFAMILY Protein kinase-like (PK-like) 2 79 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme50397g00001 Trme-Chr50397 54 948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme50397g00001 1 76 Receptor kinase-like Gene Family AT3G19300 52.632 3.02e-24 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Trme50397g00001 PK_Tyr_Ser-Thr 1.7e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme50397g00001 - - vvo:131647859 167.933