Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme502810g00001 ATGGCCCTTTCTGAATCAAACGCCGACGTATTCCCATGGCTGAAATCCATGCCAGTAGCCCCCGAATACCGACCTACTGCAGCAGAGTTCGAAGATCCGATCGGTTACATTTTCAAGATCGAAAAAGAAGCATCCAAATACGGAATCTGTAAAATCATTCCACCGTTTCCACCGTCACCTAAGAAAACCGCCATAGCTAACCTAAACAG 209 0.4641 MALSESNADVFPWLKSMPVAPEYRPTAAEFEDPIGYIFKIEKEASKYGICKIIPPFPPSPKKTAIANLN 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme502810g00001 69 Gene3D Cupin 2 68 - -
Trme502810g00001 69 PANTHER LYSINE-SPECIFIC DEMETHYLASE 12 67 - -
Trme502810g00001 69 Pfam jmjN domain 21 54 IPR003349 -
Trme502810g00001 69 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Trme502810g00001 69 SMART JmjN_1 19 60 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme502810g00001 Trme-Chr502810 25 233 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme502810g00001 7 69 C2H2 Transcription Factor Family AT5G04240 60.317 6.85e-22 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme502810g00001 JmjN 1.7e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme502810g00001 - - psat:127084261 127.102