Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme50224g00001 ATGTCTTTCAGCGGAACCCAACAGAAATGCAAGGCTTGTGATAAAACTGTTCACTTGGTTGATTCAATTTCTGCTGATGGTAGTGTTTATCACAAGAACTGCTTCAGATGTAGCCAATGCAATGGCCTTCTTGCG 135 0.4222 MSFSGTQQKCKACDKTVHLVDSISADGSVYHKNCFRCSQCNGLLA 45
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme50224g00001 45 Gene3D Cysteine Rich Protein 1 45 - -
Trme50224g00001 45 PANTHER OS06G0237300 PROTEIN 5 44 - -
Trme50224g00001 45 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Trme50224g00001 45 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Trme50224g00001 45 ProSiteProfiles LIM domain profile. 8 45 IPR001781 -
Trme50224g00001 45 Pfam LIM domain 10 44 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme50224g00001 Trme-Chr50224 8 142 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme50224g00001 LIM 5.1e-08 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme50224g00001 - K09377 tpra:123915974 96.6709