Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme50188g00001 ATGTCCTTCCGTAGTATAATGCGTGATGTGAGAGATGGATTTGGAAGTTTATCAAGGCGGAGTTTTGAGGTGAGGCTTCCTGGCCATCAAAGGGGAAAGTCACGTAGTTCGGTTCATGAATTGCATGATCAGCCTCAAGTTATACAGAACAGCCGGTGGGCTAGCCTTCCACCCGAGCTTCTACGTGATGTGATTAAGAGATTGGAAACTAATGAGAGTACTTGGCCTAATCGTAAGCATGTGGTTGCTTGTGCTGCTGTGTGCAAGTCATGGAGAGAAATGTGCAAAGAAATTGTCAGCAGTCTTGAATATTGTGGGAAGATTACTTTCCCCATTTCCTTGAAGCAG 348 0.4511 MSFRSIMRDVRDGFGSLSRRSFEVRLPGHQRGKSRSSVHELHDQPQVIQNSRWASLPPELLRDVIKRLETNESTWPNRKHVVACAAVCKSWREMCKEIVSSLEYCGKITFPISLKQ 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme50188g00001 116 CDD F-box_AtTLP-like 53 97 - -
Trme50188g00001 116 Gene3D - 46 102 - -
Trme50188g00001 116 SUPERFAMILY F-box domain 45 96 IPR036047 GO:0005515
Trme50188g00001 116 FunFam Tubby-like F-box protein 48 101 - -
Trme50188g00001 116 Pfam F-box domain 53 100 IPR001810 GO:0005515
Trme50188g00001 116 PANTHER TUBBY-RELATED 41 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme50188g00001 Trme-Chr50188 306 653 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme50188g00001 1 116 TUB Transcription Factor Family AT1G76900 66.667 1.52e-48 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme50188g00001 K19600 - gmx:100817532 219.164