Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme50165g00001 ATGGGAAATTGCTGTGCAAATCCATCCAGTACGAACAATAAACAAAAACAAAACGAAAAGCCTGGAAAAGATGAGCCCGTGAAAATAAACAACAGAAAACTGATGGTATTAAAGGAGCCCACGGGCCGANAAATTGGGCTTAGATACGAGTTAGGGAGGGAACTGGTGAGAAGAGAATTCGGAAAAGTGTTACGGAAGGAACTAGGGAGAGGAGAATTCGGAATAACGTATCTATGCAAAGACAGAGAAACAAATGAAGAACTTGCGTGCAAGTCAATTTCGAAGAATAAGCTTAAAACAGCGATTGATATTGAAGATGTGAGAAGAGAAGTTGAAATCATGAGGCATTTACCTAATCATCCTAACATCGTTTCGTTGAAGTATACTTATGAAGACGACGATGATGTTCATCTTATTATGGAACTCTGTCAAGGTCGTGAACTTGTTGATCGTATCGTTGCTAGAGGACACTACACCGAGCGCGCCGCCGCTTCTGTTGTTGATCCCATCGTCCAATTTGTTCAG 525 0.4133 MGNCCANPSSTNNKQKQNEKPGKDEPVKINNRKLMVLKEPTGRXIGLRYELGRELVRREFGKVLRKELGRGEFGITYLCKDRETNEELACKSISKNKLKTAIDIEDVRREVEIMRHLPNHPNIVSLKYTYEDDDDVHLIMELCQGRELVDRIVARGHYTERAAASVVDPIVQFVQ 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme50165g00001 175 SMART serkin_6 62 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme50165g00001 175 PANTHER SERINE/THREONINE-PROTEIN KINASE 34 175 - -
Trme50165g00001 175 Gene3D Transferase(Phosphotransferase) domain 1 49 175 - -
Trme50165g00001 175 MobiDBLite consensus disorder prediction 1 26 - -
Trme50165g00001 175 Pfam Protein kinase domain 65 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme50165g00001 175 ProSitePatterns Protein kinases ATP-binding region signature. 68 91 IPR017441 GO:0005524
Trme50165g00001 175 FunFam Calcium-dependent protein kinase 1 64 147 - -
Trme50165g00001 175 MobiDBLite consensus disorder prediction 1 16 - -
Trme50165g00001 175 SUPERFAMILY Protein kinase-like (PK-like) 65 168 IPR011009 -
Trme50165g00001 175 ProSiteProfiles Protein kinase domain profile. 62 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme50165g00001 Trme-Chr50165 370 894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme50165g00001 1 175 EF-hand Containing Proteins AT5G19450 58.470 8.64e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme50165g00001 Pkinase 9e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme50165g00001 K13412 - gmx:100815320 223.787