Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme500g00002 ATGGGGGATATACTCAATTCCAAGTTATTATCTATTTTGCCTTTGCTATTGTATTTGGGAGCTGAAAAGCCTGCATTTTTAAGCATCAGAGGATACATAAGTTTCATAAAGGCAGATCAGGCAATGTGGTATCGTGCCTGTAAGGCTTGCAATAAGAAAGTTACTGAAAGCACTGGTGCTGGGTACTGGTGTGAAAGTTGCCAGAAATATGATGAAGAATGCAATTTAAGATATATCATGGTTGTAAAAGTAACTGACGCAAGTGGCAAGGCTTTTGTTTCAACTTTTAATGAGGAAGCTGAGAAGATCATTGGTTGTCCTGCTGATGAGCTAGACAGCCTTAGATCGCAGGAGGGTGAAGATAGTCCTTATCAACTGAAATTGAAACAAGCTACTTGGACTCCACACCTCTTGCGGGTTAGTGTTTCTCAGAATGAGTATAATAATGAGAAGCGGCAAAGGATAACTGCACGGGCTGTTGTTCCTGTGGATGTCTCTGGATCTTGTGGTCCACTCCTTTTTCAAGGAGATGTTGCTGCTTCACATTGCAATGCCTTTAGTAACAGACTTTATAACTTCAAGGGAAAAGGCGATAAAGACCCTTTGGGTTCAACATATGCTGCATTCTTGAAGACTAAATGTAAGAGTCTGAGTGACACCACTACTACGGTGGCGATGGATCCTGGCAGCGCTGGCAATTTCGACAGTCATTATTATCCTAACCTTCTTCAGAAAAAGGGTTTGTTTCAATCAGATGCTACACTTCTAACACAAGATCAGTCAAGAAGTATTGCTGAAGAATTGGTTGATCAAAGCAAGTTCTTCACAGACTTTGCGCAGTCAATGCAAGGGATGGGAGCCATTAAGAACCTCGTAGGCTCAGCAGGGGAAATTTGGATCAAGTGTTCCGTTGTCAACTCATGA 924 0.4188 MGDILNSKLLSILPLLLYLGAEKPAFLSIRGYISFIKADQAMWYRACKACNKKVTESTGAGYWCESCQKYDEECNLRYIMVVKVTDASGKAFVSTFNEEAEKIIGCPADELDSLRSQEGEDSPYQLKLKQATWTPHLLRVSVSQNEYNNEKRQRITARAVVPVDVSGSCGPLLFQGDVAASHCNAFSNRLYNFKGKGDKDPLGSTYAAFLKTKCKSLSDTTTTVAMDPGSAGNFDSHYYPNLLQKKGLFQSDATLLTQDQSRSIAEELVDQSKFFTDFAQSMQGMGAIKNLVGSAGEIWIKCSVVNS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme500g00002 307 Gene3D - 15 174 IPR012340 -
Trme500g00002 307 CDD RPA1_DBD_C 21 173 IPR047192 -
Trme500g00002 307 Gene3D - 286 306 - -
Trme500g00002 307 Gene3D Peroxidase, domain 2 178 285 - -
Trme500g00002 307 PANTHER PEROXIDASE 25-RELATED 178 293 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme500g00002 307 ProSiteProfiles Plant heme peroxidase family profile. 178 306 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme500g00002 307 SUPERFAMILY Heme-dependent peroxidases 178 306 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trme500g00002 307 SUPERFAMILY Nucleic acid-binding proteins 20 169 IPR012340 -
Trme500g00002 307 FunFam Replication protein A subunit 16 173 - -
Trme500g00002 307 Pfam Peroxidase 179 269 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme500g00002 307 PRINTS Plant peroxidase signature 280 293 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme500g00002 307 PRINTS Plant peroxidase signature 225 240 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme500g00002 307 PRINTS Plant peroxidase signature 241 258 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme500g00002 307 Pfam Replication factor-A C terminal domain 26 166 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme500g00002 Trme-Chr500 1709 3597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme500g00002 19 173 Core DNA Replication Machinery Family AT5G08020 65.161 7.84e-72 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme500g00002 K07466 - qsu:112017680 257.299