Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme50079g00001 AACATGATTGGAAAAGGTGGTCATGCAGAAGTGTATAAAGGACGGTTACCTGATGGAACAGTTGTAGCAGTAAAGAGGCTAGTGAGGGATGAAAAAGAAGTTGGAGACAAAGCTGGTGATTTCTTGTCAGAGCTTGGTATCATTGCTCACATTAACCATCCAAATTCAACACGCCTCATTGGTTTTGGAATTGATCGTGGACTCTACTTTGTTCTACAATTTGCATCTCATGGAAGCCTTTCCTCTTTGCTCTTTGGTGCATTGCTACATCTTTCTCTTACTTTTTAA 288 0.4028 NMIGKGGHAEVYKGRLPDGTVVAVKRLVRDEKEVGDKAGDFLSELGIIAHINHPNSTRLIGFGIDRGLYFVLQFASHGSLSSLLFGALLHLSLTF 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme50079g00001 95 Gene3D Transferase(Phosphotransferase) domain 1 1 93 - -
Trme50079g00001 95 PANTHER OS08G0249100 PROTEIN 1 86 IPR046958 -
Trme50079g00001 95 Pfam Protein tyrosine and serine/threonine kinase 2 84 IPR001245 GO:0004672|GO:0006468
Trme50079g00001 95 SUPERFAMILY Protein kinase-like (PK-like) 1 87 IPR011009 -
Trme50079g00001 95 ProSitePatterns Protein kinases ATP-binding region signature. 3 25 IPR017441 GO:0005524
Trme50079g00001 95 ProSiteProfiles Protein kinase domain profile. 1 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme50079g00001 Trme-Chr50079 385 672 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme50079g00001 1 86 Receptor kinase-like Gene Family AT1G53420 43.678 1.62e-16 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trme50079g00001 PK_Tyr_Ser-Thr 1.8e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme50079g00001 - - tpra:123924518 149.058