Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme500392g00001 TACAAGAGATCAAGGTTGCCTAGAAACCGTAGGACTGTTAACCGTGCATATGGCGGAGTTTTGTCTGGAGGTGCTGTTAGGGAAAGGATCATCAGGGCTTTCTTGGTTGAAGAGCAAAAGATAGTGAAGAAGGTCCTCAAAATTCAGAAGGCAAAGGAAAAGCAGGCCACAAAGGC 176 0.4602 YKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQATKA 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme500392g00001 59 Pfam Ribosomal protein L34e 3 35 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trme500392g00001 59 PANTHER 60S RIBOSOMAL PROTEIN L34 1 55 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trme500392g00001 59 Gene3D - 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme500392g00001 Trme-Chr500392 1 282 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme500392g00001 1 58 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 91.379 2.11e-30 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme500392g00001 K02915 - gmx:100785061 92.4337