Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme50011g00001 ATGTCAGAAACAAATGATTCTATTATAAATACTAATGAAGGTGGAAACAATCAAGAAACTGAAGCAGAAGGTTATTCGATTTATGTGAAAGGTTTGCCTGGAAATGCTACACCTGCCCTTCTTGAGAATGAGTTCAAGAAATTTGGTCCTATTAAGAGTGGTGGTATCCAAGTTAGGGCGAAAAATGGATTTTCCTTTGGCTTTGTGGAATTCGAAGTGGCAAGTGCTGTGCAAAGTGCACTCGAG 246 0.3902 MSETNDSIINTNEGGNNQETEAEGYSIYVKGLPGNATPALLENEFKKFGPIKSGGIQVRAKNGFSFGFVEFEVASAVQSALE 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme50011g00001 82 MobiDBLite consensus disorder prediction 1 22 - -
Trme50011g00001 82 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 7 82 IPR039539 -
Trme50011g00001 82 CDD RRM_SF 27 82 - -
Trme50011g00001 82 Gene3D - 4 82 IPR012677 -
Trme50011g00001 82 SUPERFAMILY RNA-binding domain, RBD 13 82 IPR035979 GO:0003676
Trme50011g00001 82 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 82 IPR000504 GO:0003723
Trme50011g00001 82 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 82 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme50011g00001 27 82 Eukaryotic Initiation Factors Gene Family AT2G36660 39.655 5.21e-06 40.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme50011g00001 K24983 - gmx:100800392 134.806