LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme49878g00001	ATGAGTTCGAGATCAACTGGGAAGGTGAAATGGTTCAATGTTCAGAAGGGGTTTGGTTTCATTACCCCTGATGATGGTTCCGAGGAGCTTTTCGTTCACCAATCTCAGATCCAAACTGATGGTTTCCGTAGCCTTGCTGAAGGAGAAACTGTTGAGTATCAGATCGAATCTGATAACGATGGACGATCCAAGGCTGTTAGTGTTACTGGACCTAATGGTGCTTCTGTTCAGGGAACCAAACGTGGTAGCAGCGGCGGTGGTTACGAGCGCGGTGGAGCCAGTTATGGCGGTGGAGGATACAGCGGCGGAGGTGGATATGGCAGTGGCGACGGCAGAGGCTATGGTGGTGGTGGACGAGGAGGTGGACGTGGTGGAGGCGACGGTGGCAGCTATAACTGTGGTGAATCTGGCCACATGTCTAGGGATTGCAGCAGCGGTGGTCGTGGTGGAGGCAGGTAG	459	0.5359	MSSRSTGKVKWFNVQKGFGFITPDDGSEELFVHQSQIQTDGFRSLAEGETVEYQIESDNDGRSKAVSVTGPNGASVQGTKRGSSGGGYERGGASYGGGGYSGGGGYGSGDGRGYGGGGRGGGRGGGDGGSYNCGESGHMSRDCSSGGRGGGR	152

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme49878g00001	152	Gene3D	-	127	152	-	-
	Trme49878g00001	152	CDD	CSP_CDS	6	70	IPR002059	GO:0003676
	Trme49878g00001	152	Pfam	Zinc knuckle	131	144	IPR001878	GO:0003676\|GO:0008270
	Trme49878g00001	152	ProSiteProfiles	Zinc finger CCHC-type profile.	131	143	IPR001878	GO:0003676\|GO:0008270
	Trme49878g00001	152	ProSitePatterns	Cold-shock (CSD) domain signature.	18	37	IPR019844	-
	Trme49878g00001	152	Pfam	'Cold-shock' DNA-binding domain	6	70	IPR002059	GO:0003676
	Trme49878g00001	152	ProSiteProfiles	Cold-shock (CSD) domain profile.	4	70	IPR002059	GO:0003676
	Trme49878g00001	152	MobiDBLite	consensus disorder prediction	60	82	-	-
	Trme49878g00001	152	SMART	csp_8	6	71	IPR011129	GO:0003676
	Trme49878g00001	152	Gene3D	-	1	83	IPR012340	-
	Trme49878g00001	152	SUPERFAMILY	Nucleic acid-binding proteins	3	70	IPR012340	-
	Trme49878g00001	152	PRINTS	Cold shock protein signature	43	61	IPR002059	GO:0003676
	Trme49878g00001	152	PRINTS	Cold shock protein signature	28	37	IPR002059	GO:0003676
	Trme49878g00001	152	PRINTS	Cold shock protein signature	7	22	IPR002059	GO:0003676
	Trme49878g00001	152	PANTHER	COLD SHOCK DOMAIN PROTEIN 2	2	151	-	-
	Trme49878g00001	152	MobiDBLite	consensus disorder prediction	55	152	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme49878g00001	Trme-Chr49878	467	925	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	CSD	Trme49878g00001		CSD	2.2e-27	CL0021

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme49878g00001	-		K09250	gmx:100799708	150.599