Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme49845g00001 TATACTTTCTTACCCTTGCTGTTGTTTCTTTTGCAGCTTGCTTTGACCATTGTTTATATTGCTGGTGGTGTTTTTGTTGCTGGTTGGATTGAGGTTTCATGTTGGATTCTTACTGGAGAACGGCAGACAGCTGTCATCAGATCAAAATATGTTCGAGTATTACTTAACCAAGATATGAGTTTCTTTGATACTTATGGGAATAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTACTGCTCATTCAGTCTGCTCTCAGTGAAAAAGTTGGGAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTTATTGCTTTTATCAATTGTTGGCAGATTGCATTGATAACATTAGCTACAGGTCCATTTATTGTTGCTGCTGGAGGAATATCAAATATATTTCTTCATAGGCTTGCAGAGAATATCCAAGATGCATATGCCGAAGCAGCCAGCATTGCTGAACAG 468 0.3761 YTFLPLLLFLLQLALTIVYIAGGVFVAGWIEVSCWILTGERQTAVIRSKYVRVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQ 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme49845g00001 156 PANTHER ABC TRANSPORTER B FAMILY 12 156 IPR039421 -
Trme49845g00001 156 Pfam ABC transporter transmembrane region 12 155 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme49845g00001 156 SUPERFAMILY ABC transporter transmembrane region 9 155 IPR036640 GO:0005524|GO:0016020
Trme49845g00001 156 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 156 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme49845g00001 156 Gene3D ABC transporter type 1, transmembrane domain 9 156 IPR036640 GO:0005524|GO:0016020
Trme49845g00001 156 Coils Coil 136 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme49845g00001 Trme-Chr49845 313 959 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme49845g00001 10 156 Calmodulin-binding Proteins AT2G36910 42.177 6.26e-39 138