Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme49831g00001 GGTGGGCAAGTTCTATATATCAGGATGCCTGCTTCAGAATTAGTCGACAGGAGGAACTTGAGAAAAATAGTTGTAATTGCTGTTTCTGCAGCTTTGGGAATGCTTTTACTTGCGATATATTTTTTCTACAGATTCCGGAGGAGCATTGTTGGGAAGTCAAAGACTGAAGGTGAGTACGAAAGACACGAGAACGATATGGATCTCCCCTTGCTTAATTTGTCAACAATTATTATTGCCACCGACAACTTTTCAGAGAAGAACAAGATTGGAGAAGGTGGTTTTGGACCTGTCTATTTGGGAAAATTAGGAAGTGGGCTAGAAATTGCTGTCAAGAGACTTTCACAGAGCTCAAAACAAGGGATGAGAGAATTCATAAATGAAGTAAAACTAATTGCAAATGTTCAGCACCGAAATCTTGTTAAGCTTATTGGCTGTTGCATTCAGAGACATGAAAAGTTGCTAGTTTATGAATACATGTCTAATGGTAGCCTAGACTACTTCATTTTTGGTATGTAA 516 0.3857 GGQVLYIRMPASELVDRRNLRKIVVIAVSAALGMLLLAIYFFYRFRRSIVGKSKTEGEYERHENDMDLPLLNLSTIIIATDNFSEKNKIGEGGFGPVYLGKLGSGLEIAVKRLSQSSKQGMREFINEVKLIANVQHRNLVKLIGCCIQRHEKLLVYEYMSNGSLDYFIFGM 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme49831g00001 171 Pfam Protein tyrosine and serine/threonine kinase 86 168 IPR001245 GO:0004672|GO:0006468
Trme49831g00001 171 Gene3D Phosphorylase Kinase; domain 1 46 158 - -
Trme49831g00001 171 SUPERFAMILY Protein kinase-like (PK-like) 63 170 IPR011009 -
Trme49831g00001 171 FunFam receptor-like serine/threonine-protein kinase SD1-8 54 158 - -
Trme49831g00001 171 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 17 170 - -
Trme49831g00001 171 ProSiteProfiles Protein kinase domain profile. 83 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme49831g00001 Trme-Chr49831 100 927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme49831g00001 23 169 Receptor kinase-like Gene Family AT4G23190 46.939 3.53e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme49831g00001 PK_Tyr_Ser-Thr 7.5e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme49831g00001 - - gmx:100808807 227.254