Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4975g00001 GCTGTTAATGAATGCAAGCAAGTTCTTGATGCTGTTGAGAAGGTATTTTCTCAAGGTATACCTGATACTCAAGTGGACAGTAGATTGCAGGAGATAGTAAGCTGTGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAGGCTGGTTGCTATCCCGAGGCAATAACGGCTTACAGGCACGCCCTTCTCAGTCAATGGAACCTTGATAACGATTGCTGTGCGAGAATTCAGAAAGCTTTTGCAGCATTTTTGCTATATAGCGGGGTGGAGGCAAGTCCACCTAGTTTTTCCGTTCAGATTGAAGGGGCTTATGTACCTAAAAATAATATAGAAGAGGCGATTCTTCTTCTTATGATTATTGTGAGGAAGTGTAGCCTAGGAAAGGCAAAATGGGATCCTTCTGTTATGGAACACCTAACTTTTGCACTTTCAGCGTGTGGTGAAACTTCTATTTTGGCGAAACAATTTCAAGAGTTGATGCCTGGCGTATATCATCGAATTGATCGTTGGAATTCTTTAGCTCTATGTCTTAGTGGTGCTGGACAAAATAAAAATGCTTTGAGTCTGCTAAGGAAGTCTTTGCACAAACATGAACGGCCCGATGACTTGATAGCGTTATTATTGGCTGCAAAGGTTTGCAGTGATGATCCTCATCTTGCTGCTGAGGGAGCAGGATATGCACAGAGGGCAATCGATAAAGCTCAGGGCTTAAATCAGCATTTGAAAGGCGTTGGTCTTCGAATGCTCGGACTTTGCCTTGGAAAGCAAGCTAAGGTTGCTTCCTCNNNNNNNGAGAGGTCTATGCTTCAGTCAAAAGCTTTGCAATCACTGGAGGAGGCAGTTAGATTAGAGCAAAACAATTTTGATCTTATTTTTGAATTGGCTATTCAATATGCGGAACACCGAAATTTGGCTGTTGCTTTACGCTATGCTAAGCAGTTCTTCGACAAAACTGGTGGCTCTAAATTGAAAGGTTGGAGATTGCTTTCTCTGGTTTTGTCTGCACTGAAAAGATTTGCAGAGGCTGAAGTGGACGAGGATGATAAAATAAATGAATTTGATGTTTGGCATGGTCTAGCAAATTTATATGCAAGCCTTTCACATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCTAGAGAGTTGAAGGAATACTCGGCAGCAACAATACAAACCGAAGGCAAGAGCGAAAACTTTATGCTCTTAAAAGTGTTATACTTTAGGATGTTCAACTTATATTTATTTACCAATATTAATATGGTTGTAGCAGGTGTGGTGTTTGACGGTCGTGGACAAAACGATGAAGCTCTTGCGGCTGCTGCTAATGCTGTCCTAGTTGAACCGAGCCATGTTCCAAGCAAGATATTGATGGCTTCTTTGATGCTGAAAAATGGTCCCAACGCATCACCTGTTTCTAGAAGCATACTTTCTGATGCACTCAGAATAGAACCAACTAACCGCAATGCTTGGTATTATCTCGGATTAACTCACAAGAATGATGGTCGACTAGGCGATGCTGCTGATTGCTTCCAGGCAGCTGCCATGCTTGAAGAATCTGATCCTATTGAAAGTTTTAGTTCTATGATTTAA 1587 0.4171 AVNECKQVLDAVEKVFSQGIPDTQVDSRLQEIVSCAVELLPELWKQAGCYPEAITAYRHALLSQWNLDNDCCARIQKAFAAFLLYSGVEASPPSFSVQIEGAYVPKNNIEEAILLLMIIVRKCSLGKAKWDPSVMEHLTFALSACGETSILAKQFQELMPGVYHRIDRWNSLALCLSGAGQNKNALSLLRKSLHKHERPDDLIALLLAAKVCSDDPHLAAEGAGYAQRAIDKAQGLNQHLKGVGLRMLGLCLGKQAKVASSXXERSMLQSKALQSLEEAVRLEQNNFDLIFELAIQYAEHRNLAVALRYAKQFFDKTGGSKLKGWRLLSLVLSALKRFAEAEVDEDDKINEFDVWHGLANLYASLSHWKDAEICLQKARELKEYSAATIQTEGKSENFMLLKVLYFRMFNLYLFTNINMVVAGVVFDGRGQNDEALAAAANAVLVEPSHVPSKILMASLMLKNGPNASPVSRSILSDALRIEPTNRNAWYYLGLTHKNDGRLGDAADCFQAAAMLEESDPIESFSSMI 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4975g00001 528 SUPERFAMILY TPR-like 271 517 IPR011990 GO:0005515
Trme4975g00001 528 Gene3D Tetratricopeptide repeat domain 471 524 IPR011990 GO:0005515
Trme4975g00001 528 SMART tpr_5 166 199 IPR019734 GO:0005515
Trme4975g00001 528 SMART tpr_5 352 385 IPR019734 GO:0005515
Trme4975g00001 528 SMART tpr_5 486 519 IPR019734 GO:0005515
Trme4975g00001 528 SUPERFAMILY TPR-like 44 306 IPR011990 GO:0005515
Trme4975g00001 528 Gene3D Tetratricopeptide repeat domain 35 464 IPR011990 GO:0005515
Trme4975g00001 528 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
Trme4975g00001 528 PANTHER PROTEIN NPG1 1 343 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4975g00001 Trme-Chr4975 59 2146 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4975g00001 1 528 Calmodulin-binding Proteins AT2G43040 58.127 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4975g00001 K21843 - gmx:100811897 728.398