Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme49755g00001 GCTGCTGCTAAAGCTGTGGAGGCACTTAATGGAAAGAAATTTGATGAAAAGGAGTGGTATGTTGGAAAAGCCCTAAAAAAATATGAAAGGGAGCTTGAACTGAAAGAAAAACATGAGCAGAGTATGAAGGAAACTGTTGACAAGTTTTATGGTGCAAACTTGTATCTCAAAAACTTGGATGATAGTGTCAGTGATGAAAAACTTAGCGAACTGTTCTCCGAGTTTGGTACAGTAACTTCATGCAAGATTCTGCGAGATCAACAGGGAATTAGTAGGGGATCTGGATTTGTTGCTTTTTCAACTCCCGAGGAAGCAACTCGAGCTCTTGCTGCGATGAATGGAAAAATGGTTGCTGGCAAACCTCTCTATGTTGCTCCCGCACAGAAAAAGGAAGAGAGAAAAGCAAGGTTACAGGTAATATTGCACAACAATGGATCAACAGTTAATTCTATGCTTTATAATACCGTGTGGTAA 474 0.4008 AAAKAVEALNGKKFDEKEWYVGKALKKYERELELKEKHEQSMKETVDKFYGANLYLKNLDDSVSDEKLSELFSEFGTVTSCKILRDQQGISRGSGFVAFSTPEEATRALAAMNGKMVAGKPLYVAPAQKKEERKARLQVILHNNGSTVNSMLYNTVW 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme49755g00001 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 129 IPR000504 GO:0003723
Trme49755g00001 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 122 IPR000504 GO:0003723
Trme49755g00001 157 SMART rrm1_1 53 125 IPR000504 GO:0003723
Trme49755g00001 157 CDD RRM4_I_PABPs 51 129 - -
Trme49755g00001 157 PANTHER RNA BINDING PROTEIN 2 136 - -
Trme49755g00001 157 Coils Coil 25 45 - -
Trme49755g00001 157 SMART rrm2_1 53 125 IPR003954 GO:0003676
Trme49755g00001 157 Gene3D - 30 139 IPR012677 -
Trme49755g00001 157 FunFam Polyadenylate-binding protein 35 140 - -
Trme49755g00001 157 SUPERFAMILY RNA-binding domain, RBD 52 141 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme49755g00001 Trme-Chr49755 99 746 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme49755g00001 2 138 Eukaryotic Initiation Factors Gene Family AT1G49760 71.533 5.19e-66 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme49755g00001 K13126 - vvi:100255846 216.083