Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4972g00001 ATGTTTGGAAGATGGATGACTGCTTCGGATGTAGCTTTGACAATCTTGTTTCCCATTGAACGACAACTCTGTGATCATGTCTTCTCGGGGTTCTCCACCGCTGGTTCTAATTGTTTCATTGAGGTTTGTCAAGAAGCAACGTTTCAGCTGCTGAATTTAGCAAACACTGTTAGTTCTGGGAGCCCTTCAAAGTGGCGTTTGTTCAAAATGCTCGACATATTTAAGCAGTTACATAGTCTAATTCCGAAATTCCAATCTTTGTTCCCAGATTCGACATTACAGTACCAAGCAATCGCAGTTCAGAATAGATTAGGAGAAGCTAGCAGAGACCTTTTCATGGAAATGCATAATTTTATTTTTAGAGTCCCAGCGGCACCAAATTTTTTTGCATCTTATCGCAAATATTATCCAATGGCCGCCGAGGTCATGAGCTACGTGACTTCTGCTTGCAGGTCACAGCGGACGCTAGAACAAATTTTACAAGAATACTCCGTGGTTGACAATGAAGTGGAAGCATCTTCTTTCTTCTTGAAGCAGATGGAGAAGATAATAAGGATGTTACAAAAAAAATTGATAGTCATGTCCAAAAAGTACAAGGACCCTTCTTTGCGCCATATTTTCATGGTAAATAATAGGTCGCACATAGAAGCTATGAACAAAAGCTGGGAATTGGAAACAATTTTGGGCAATGACTGGTTCCAAAATAACAAAGAAAAAATCCAACAAAACCTTGAGTTTTATAAACGAAACTCATGGAATGAAGTGTTGGAGTTTCTGAAGCTAGACAGCAATGAGAAGTTGGCACTCAATGACAATATTACAGAAGAGGTATTGAAAGAGAAGATCGATTTGTTCAACAGTCGCTTTGAAGATATATGCAGAGTTCAGTCTGAATGGTTTGTATATGACAATAAGCTAAGGGAAGAAATAATATCATCTGTGGGAAACATCTTATTGCCAGCATATGGAATCTTTGTTGGGAGGCTCCAGGATATTCTTGGTAACCAAGCTTATAAGTACATTAAATATGGAATGTTTGAGATTCAAGATCTACTCAACCATTTGTTTCTAGGAAAAAAAAATATATGA 1089 0.3802 MFGRWMTASDVALTILFPIERQLCDHVFSGFSTAGSNCFIEVCQEATFQLLNLANTVSSGSPSKWRLFKMLDIFKQLHSLIPKFQSLFPDSTLQYQAIAVQNRLGEASRDLFMEMHNFIFRVPAAPNFFASYRKYYPMAAEVMSYVTSACRSQRTLEQILQEYSVVDNEVEASSFFLKQMEKIIRMLQKKLIVMSKKYKDPSLRHIFMVNNRSHIEAMNKSWELETILGNDWFQNNKEKIQQNLEFYKRNSWNEVLEFLKLDSNEKLALNDNITEEVLKEKIDLFNSRFEDICRVQSEWFVYDNKLREEIISSVGNILLPAYGIFVGRLQDILGNQAYKYIKYGMFEIQDLLNHLFLGKKNI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4972g00001 362 SUPERFAMILY Cullin repeat-like 4 356 IPR016159 -
Trme4972g00001 362 Pfam Exo70 exocyst complex subunit 4 353 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trme4972g00001 362 Coils Coil 177 197 - -
Trme4972g00001 362 Gene3D Exocyst complex component Exo70 1 361 - -
Trme4972g00001 362 PANTHER EXOCYST COMPLEX PROTEIN EXO70 3 357 IPR004140 GO:0000145|GO:0006887
Trme4972g00001 362 Coils Coil 230 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4972g00001 Trme-Chr4972 873 1961 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4972g00001 4 358 EXO70 exocyst subunit family AT5G58430 42.778 7.13e-90 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4972g00001 K07195 - mtr:112421859 432.565