LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme49623g00001	ATGGAAGAATTGGAAGCTAGAGAAGTGCAATTACCAGACAACGAAAACGATTTGAGGCAGAAAACCAAAGCTGATCTCTTGGCTCAGCTCAAAGGCCTCGAGGCTGAACTCGCCTTGCTCCGTGTTGTTAAGGTCACCGGTGGTGCACCCAAGAAGCTCCCCAAGATTAAGGTGGTGAGGTTTTCCATTGTTCAGGTTTTGACAGTGATTTCTCAGAAACAGAAGACTGCATTAAGGGAAGCTTACAAGGAGTATTTTCCACTCGATCTTCGCCCAAAGAAGACCGAGCCATTCGCAGAAGGCTCACCAAGCACCATACATCATTGA	327	0.4709	MEELEAREVQLPDNENDLRQKTKADLLAQLKGLEAELALLRVVKVTGGAPKKLPKIKVVRFSIVQVLTVISQKQKTALREAYKEYFPLDLRPKKTEPFAEGSPSTIHH	108

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme49623g00001	108	Pfam	Ribosomal L29 protein	16	73	IPR001854	GO:0003735\|GO:0005840\|GO:0006412
	Trme49623g00001	108	NCBIfam	50S ribosomal protein L29	17	73	IPR001854	GO:0003735\|GO:0005840\|GO:0006412
	Trme49623g00001	108	Coils	Coil	23	43	-	-
	Trme49623g00001	108	PANTHER	60S RIBOSOMAL PROTEIN L35	16	96	IPR045059	GO:0000463\|GO:0022625
	Trme49623g00001	108	SUPERFAMILY	Ribosomal protein L29 (L29p)	16	74	IPR036049	GO:0003735\|GO:0005840\|GO:0006412
	Trme49623g00001	108	Gene3D	-	14	85	IPR036049	GO:0003735\|GO:0005840\|GO:0006412
	Trme49623g00001	108	Hamap	50S ribosomal protein L29 [rpmC].	11	73	IPR001854	GO:0003735\|GO:0005840\|GO:0006412
	Trme49623g00001	108	FunFam	60S ribosomal protein L35	14	85	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme49623g00001	Trme-Chr49623	139	465	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme49623g00001	16	98	Cytoplasmic Ribosomal Protein Gene Family	AT2G39390	72.941	9.97e-35	114

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme49623g00001	K02918		-	sind:105158851	125.561