Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme49612g00001 ATGTTCAATAAATGGCAAGCTCAAAAATGGTGGGGCGAGAATTACGACAGAATCATGGAACTTTACAATGTCCAACGATTTAATAGACAAGCTCTCAACACTCCTCCAAGATCTGAGGCCGATGAGCAAAGAGATTCTACTTACTCTAGATTGACATCAGCAAGAGAAAGTCCTATGGCATCAGTTAAGGATTGGACACCAAGAAGTCACTACAAACCATCGGGACAGTTGGATCAAGGCGGAGGACACCACTTTCAAGCAGGGTCATCTATGGAACCATCAAGGGCAACAACATCATCTAGAGATGAACCTTCGATTAGTAATGCAAGTGAAATGGAGTCAGAATGGGTAGAACAAGATGAGCCTGGAGTTTACATTACAATCAGACAGCTAGCTGATGGTACTAGGGAACTTAGACGTGTCAGATTCAG 431 0.4316 MFNKWQAQKWWGENYDRIMELYNVQRFNRQALNTPPRSEADEQRDSTYSRLTSARESPMASVKDWTPRSHYKPSGQLDQGGGHHFQAGSSMEPSRATTSSRDEPSISNASEMESEWVEQDEPGVYITIRQLADGTRELRRVRF 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme49612g00001 143 ProSiteProfiles BRX domain profile. 1 23 IPR013591 -
Trme49612g00001 143 Pfam Transcription factor regulating root and shoot growth via Pin3 1 22 IPR013591 -
Trme49612g00001 143 Pfam Transcription factor regulating root and shoot growth via Pin3 113 143 IPR013591 -
Trme49612g00001 143 MobiDBLite consensus disorder prediction 90 113 - -
Trme49612g00001 143 MobiDBLite consensus disorder prediction 32 123 - -
Trme49612g00001 143 ProSiteProfiles BRX domain profile. 114 143 IPR013591 -
Trme49612g00001 143 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 143 IPR044532 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme49612g00001 Trme-Chr49612 362 876 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme49612g00001 1 143 Major Intrinsic Protein MIP AT1G31880 64.103 1.64e-63 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme49612g00001 - - gmx:100785003 253.447