Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme49606g00001 ACTATTGCTGCAACAAGGATCCAGACTGCATTCCGGGCTTATAAGGCAAGAAAAACTCTACGGCGATTGAAAGGTTTCACAAAACTGAAGATTTTAACAGAAGGTTATTCTGTTCAAAAGCAAGCCAGTACAACTATAACATACCTTCATTCATGGAGCAAGATACAGGGCGAAATTAGAGCTCGTCGAATCTGTATGGTGACAGAAGACAGGATCAGGCGGAAGAAACAAGAGTCTCAACTAAAACTTGAGGGAAAGCTCCATGATTTTGAGGTTGAATGGTCTGGTGGTCCTGAAACCATGGAGGAGACACTTGGGAGAATACATCAAAGAGGAGMAGCAGCAGTGAAGCGAGAAAGAGCCATGGCTTATGCTTTTTCTCATCAAGTAAGTCAATCATAG 402 0.4254 TIAATRIQTAFRAYKARKTLRRLKGFTKLKILTEGYSVQKQASTTITYLHSWSKIQGEIRARRICMVTEDRIRRKKQESQLKLEGKLHDFEVEWSGGPETMEETLGRIHQRGXAAVKRERAMAYAFSHQVSQS 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme49606g00001 133 ProSiteProfiles IQ motif profile. 1 28 IPR000048 GO:0005515
Trme49606g00001 133 PANTHER IQ-DOMAIN 5-RELATED 3 130 - -
Trme49606g00001 133 Pfam IQ calmodulin-binding motif 3 21 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme49606g00001 Trme-Chr49606 3 846 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme49606g00001 3 129 IQD Protein Family AT2G33990 67.717 1.80e-56 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme49606g00001 - - gmx:100813685 224.942