Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme49576g00001 CCACTACAAAGGTGCTTTTGGAAGGGACAGATTTCCGGAAGCGGATATGGAATAGCTCAGTTTGCACTTTATGCTTCTTATGCACTCGGTCTTTGGTATGCTTCTTGGCTAGTGAAACACGGAATATCCGACTTCTCTAAAACAATCCGAGTTTTCATGGTCCTCATGGTCTCTGCCAATGGTGCTGCCGAGACTTTAACACTGGCTCCTGACTTCATCAAGGGAGGTAGAGCCATGAGATCAGTCTTTGATCTCCTCGACCGTCGAACCGAGATTGAACCAGATGATCAAGATGCTACTCCTGTTCCTGATCGTCTCCGCGGTGAAGTTGAACTTAAGCATGTGGACTTCTCTTATCCCACTAGACCAGATATGCCGGTTTTCCGTGACCTTAATCTTCGTATCCGAGCTGGCAAAACTCTTGCCCTTGTTGGACCTAGTGGCTGCGGTAAGAGCTCGGTGATTGCACTTATACAGAGATTCTATGATCCAACGTCTGGCCGGGTAATGATTGATGGAAAAGACATCAGAAAATACAACCTCAAGTCCTTAAGAAGACACATTTCTGTAGTACCTCAAGAGCCATGCCTCTTTGCTACTACTATTTATGAAAACATTGCATATGGCCATGACTCAGCAACAGAAGCCGAGATAATCGAAGCAGCAACACTTGCTAATGCTCACAAGTTCATATCTTCTCTACCGGACGGATACAAAACATTTGTAGGAGAGAGAGGCATTCAACTCTCCGGGGGACAAAAACAAAGAATAGCAGTTGCTCGTGCTTTTTTAAGGAAAGCCGAGCTTATGCTTCTTGACGAGGCAACAAGTGCACTTGATGCTGAGTCAGAGAGGTCTGTTCAAGAGGCTCTAGACCGCGCTTCAACGGGAAAAACCACCATCATTGTTGCACATAGGTTATCAACTATAAGGAATGCCAATGTGATCGCTGTGATTGAT 960 0.4552 PLQRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDQDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLNLRIRAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISSLPDGYKTFVGERGIQLSGGQKQRIAVARAFLRKAELMLLDEATSALDAESERSVQEALDRASTGKTTIIVAHRLSTIRNANVIAVID 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme49576g00001 320 FunFam ABC transporter B family member 19 76 98 - -
Trme49576g00001 320 ProSitePatterns ABC transporters family signature. 249 263 IPR017871 GO:0005524|GO:0016887
Trme49576g00001 320 Gene3D - 99 320 IPR027417 -
Trme49576g00001 320 Pfam ABC transporter 129 277 IPR003439 GO:0005524
Trme49576g00001 320 SUPERFAMILY ABC transporter transmembrane region 8 94 IPR036640 GO:0005524|GO:0016020
Trme49576g00001 320 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 110 320 IPR003439 GO:0005524
Trme49576g00001 320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 320 IPR027417 -
Trme49576g00001 320 SMART AAA_5 137 320 IPR003593 GO:0016887
Trme49576g00001 320 CDD ABC_MTABC3_MDL1_MDL2 110 320 - -
Trme49576g00001 320 Gene3D ABC transporter type 1, transmembrane domain 8 98 IPR036640 GO:0005524|GO:0016020
Trme49576g00001 320 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 2 320 IPR039421 -
Trme49576g00001 320 FunFam ABC transporter B family member 1 100 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme49576g00001 Trme-Chr49576 2 961 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme49576g00001 1 320 Calmodulin-binding Proteins AT2G36910 86.250 0.0 601