Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme49571g00001 ATGAAAGGGCGATCGAATCGCCCTCAGAGTTTTGACCCTCCGCCGGACGAATGGGTCGACGGTTCATGGACGGTGGACTGCATCTGCGGCGTCACGTTCGACGACGGCGAAGAGATGGTAAAGTGTGACGAGTGTGATGTTTGGGTTCATACGCGTTGTTCTCGTTATGTGAAAGGTGATGACATGTTCGCCTGTGACAAGTGCAAGAATAAGAATAACCGCGCCGGAATGGAAAACAATCCGGAAGAAACCGAGGTTGCTCGATTGCTTGTTGAGCTTCCGACGAAGACAATTTCGTTAGAGAGAAGGAATAATAATAGAAGTAATTCTCTTTCGTCTGCGAGAGCTGCGTCTTGTTCACGTCGTCCTTTTAAGTTATGGACTGATATACCTATGGAGGAGAGGGTTCATGTTCAGGGTATTCCTGGTGGCGATCCTTCTCTGTTTGCTGGAAAGGCTGTGTCGTCGATTTTTGGTCCGCAGTTGTGGAAATGTACTGGTTATGTTCCTAAGAAGTTTAGTTTTCAGTATAGGGAATTTCCGTCTTGGTATGAGAATGATGATAAGGGTGCACAAGAGAATGATAATGATATTAAGGATAAGGATAATGGGGCTGGGGTACTTTTATCGTTATCGAAAGAGACTAATAATGTGTTAGCTACGTCTCCTGTTGCGGCTTTGGTTGATATGAGATCAAGCCAGGGTAAGAAGGGTTTCAAAGAGAGTGGAATGGGAAAGTTTGGCAGAGATCATATGCCACGTGTCCATAATGCGGTCAAGAAGGAGAGGACTTTGAT 797 0.4567 MKGRSNRPQSFDPPPDEWVDGSWTVDCICGVTFDDGEEMVKCDECDVWVHTRCSRYVKGDDMFACDKCKNKNNRAGMENNPEETEVARLLVELPTKTISLERRNNNRSNSLSSARAASCSRRPFKLWTDIPMEERVHVQGIPGGDPSLFAGKAVSSIFGPQLWKCTGYVPKKFSFQYREFPSWYENDDKGAQENDNDIKDKDNGAGVLLSLSKETNNVLATSPVAALVDMRSSQGKKGFKESGMGKFGRDHMPRVHNAVKKERTL 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme49571g00001 265 ProSitePatterns Zinc finger PHD-type signature. 27 68 IPR019786 -
Trme49571g00001 265 SUPERFAMILY FYVE/PHD zinc finger 16 73 IPR011011 -
Trme49571g00001 265 PANTHER UNCHARACTERIZED 1 265 - -
Trme49571g00001 265 Pfam PHD-finger 27 71 IPR019787 -
Trme49571g00001 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 76 IPR013083 -
Trme49571g00001 265 MobiDBLite consensus disorder prediction 242 265 - -
Trme49571g00001 265 SMART PHD_3 26 69 IPR001965 -
Trme49571g00001 265 MobiDBLite consensus disorder prediction 235 265 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme49571g00001 25 68 PHD Transcription Factor Family AT5G22260 44.681 1.96e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme49571g00001 PHD 6.8e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme49571g00001 - - pcin:129322189 313.153