Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme49508g00001 TCCATACCATTGTTTTCTAACATACCTACCTTGGTTATTGGAATGGATGTTTCACATGGATCTCCGCATCAATTAAATGTACCGTCCATTGCTGCGGTTGTGAGCTCGAGATATTGGCCTCAAATTTCACGTTACAAAGCTGTAGTCCGCACTCAGCCATCAAAAGTAGAGATGATTGCATCTCTATTCAAGCCTGTTTCAGATACTAAGGATGATGGTATAATCAGTGAGGTTCTTAAGGACTTCCGCGCAACTTCAGGAATGAAGCCTAAACAAATTATAATTTTTAGGGACGGAGTGAGTGATTCACAGTTCAACCAGGTTCTCAACATTGAATTGAATGAAATCATAAAGGCATGCAAACATTTAGATGAAAGTTGGTGTCCAAAGTTTACAGTGATTGTTGCTCAGAAGAATCACCACACTAGATTCTTCAAAGCCAATGCTCCTCAAGAAAATGTTTCACCTGGTTTGTTAATTTGA 483 0.3913 SIPLFSNIPTLVIGMDVSHGSPHQLNVPSIAAVVSSRYWPQISRYKAVVRTQPSKVEMIASLFKPVSDTKDDGIISEVLKDFRATSGMKPKQIIIFRDGVSDSQFNQVLNIELNEIIKACKHLDESWCPKFTVIVAQKNHHTRFFKANAPQENVSPGLLI 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme49508g00001 160 Gene3D - 2 160 IPR036397 GO:0003676
Trme49508g00001 160 ProSiteProfiles Piwi domain profile. 1 160 IPR003165 GO:0003676
Trme49508g00001 160 Pfam Piwi domain 8 159 IPR003165 GO:0003676
Trme49508g00001 160 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 8 158 - -
Trme49508g00001 160 SUPERFAMILY Ribonuclease H-like 5 160 IPR012337 -
Trme49508g00001 160 SMART Piwi_a_2 2 160 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme49508g00001 Trme-Chr49508 3 798 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme49508g00001 2 153 Eukaryotic Initiation Factors Gene Family AT5G43810 45.513 2.07e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme49508g00001 K11593 - ini:109182132 234.572