Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme495044g00001 ACCAAACCTAACTCCCAAACCCAAACCCCTCAAAACGACGTCGTTACCCATGAAAACCCAACTTCCAACCCCGAAAACATCGCCACCACCACTTTCTCCGACCTCGGCCTCTCCGAATGGGCGGTCAAGACATGCAAAGAGCTCGGAATGAAATTTCCACGTCGCGTCCAGCAGTACTGTATCCCGAAGATTCTAGAAGGTCGTCATGTAATTGGAATTGATGAGACTGGTAGCGGTAAAACGGCGGCGTTTGCGCTTCCGATTCTTCAGCGACTAGCTGAG 282 0.5142 TKPNSQTQTPQNDVVTHENPTSNPENIATTTFSDLGLSEWAVKTCKELGMKFPRRVQQYCIPKILEGRHVIGIDETGSGKTAAFALPILQRLAE 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme495044g00001 94 Gene3D - 1 94 IPR027417 -
Trme495044g00001 94 MobiDBLite consensus disorder prediction 1 26 - -
Trme495044g00001 94 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 22 93 - -
Trme495044g00001 94 Pfam DEAD/DEAH box helicase 55 93 IPR011545 GO:0003676|GO:0005524
Trme495044g00001 94 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 30 58 IPR014014 GO:0003724
Trme495044g00001 94 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 93 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme495044g00001 Trme-Chr495044 2 283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme495044g00001 30 90 Eukaryotic Initiation Factors Gene Family AT3G19760 37.705 4.37e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme495044g00001 K14778 - gmx:100804060 116.316