Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme49446g00001 ATGAGTGACAAGGAGCAATGGTTCTTTTTCATTCCAAGGCAASAAAGTGAAGTGAGAGGAGGAAGACCAAGACGTCTCACAACAACCGGGTACTGGAAAGYCACCGGATCTCCTAATCATGTTTATTCGTCKGATAATCGCGTCATTGGCATGAAAAGAACTATGGTTTTCTATTGTGGAAGAGCTCCAAATGGAAAGAAAACCGATTGGAAAATGAATGAGTATAAGGCCATTCAATTAGATCATGAAGCATCCTCTTCAAATAAAGTAGAACCTAAGGTACGTCACGTGCAATATGTATCTTGA 306 0.3987 MSDKEQWFFFIPRQZSEVRGGRPRRLTTTGYWKXTGSPNHVYSSDNRVIGMKRTMVFYCGRAPNGKKTDWKMNEYKAIQLDHEASSSNKVEPKVRHVQYVS 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme49446g00001 101 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 79 - -
Trme49446g00001 101 SUPERFAMILY NAC domain 2 89 IPR036093 GO:0003677|GO:0006355
Trme49446g00001 101 Gene3D NAC domain 1 100 IPR036093 GO:0003677|GO:0006355
Trme49446g00001 101 ProSiteProfiles NAC domain profile. 1 97 IPR003441 GO:0003677|GO:0006355
Trme49446g00001 101 Pfam No apical meristem (NAM) protein 3 76 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme49446g00001 Trme-Chr49446 354 659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme49446g00001 3 95 NAC Transcription Factor Family AT3G44350 61.290 3.29e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme49446g00001 NAM 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme49446g00001 - - psat:127125619 157.147