Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme49335g00001 AAAGCCTTTCCAAAAGACGATCCTACCAAACCATGCAGGTTGACTGCTTTTGTTGGCTACAAGTCCGGGATGACCCATATAGTTAGGGAGGTCGAGAAACCTGGATCAAAGCTTCATAAGAAAGAGACATGTGAAGCTGTCACTATCATTGAAACTCCTCCAGTTGTTGTTGTTGGAGTTGTGGGATATGTGAAGACACCACGTGGCCTTCGCACACTGAATACTGTTTGGGCTCAGCATCTGAGTGAAGATATCAAGCGTCGATTTTACAAGAACTGGAGCAAATCAAAGAAGAAGGCTTTTACCAAATATACCAAAAAATATGAAACTGAGGAAGGAAAGAAAGATATTCAATCTCAGCTTGAGAAATTGAAAAAGTACGCCACTGTCATCCGTGTTCTTGCTCACACTCAG 414 0.4227 KAFPKDDPTKPCRLTAFVGYKSGMTHIVREVEKPGSKLHKKETCEAVTIIETPPVVVVGVVGYVKTPRGLRTLNTVWAQHLSEDIKRRFYKNWSKSKKKAFTKYTKKYETEEGKKDIQSQLEKLKKYATVIRVLAHTQ 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme49335g00001 138 Gene3D - 59 138 - -
Trme49335g00001 138 Gene3D Ribosomal protein L3, domain 3 1 58 IPR044892 -
Trme49335g00001 138 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 138 IPR045077 GO:0003735|GO:0005840|GO:0006412
Trme49335g00001 138 FunFam 60S ribosomal protein L3 15 93 - -
Trme49335g00001 138 SUPERFAMILY Translation proteins 2 138 IPR009000 -
Trme49335g00001 138 Pfam Ribosomal protein L3 1 138 IPR000597 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme49335g00001 Trme-Chr49335 37 554 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme49335g00001 1 138 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 87.681 5.92e-80 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme49335g00001 K02925 - gmx:100792174 206.838