Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme49290g00001 ATGCCTCAACTTAAAGTACCGAATATTGATTGCTATTTTTTGTTTGAAGCTGTAACTGGAAAAGGATTTGTTGCTGTGAACATAACATTTCAAAACACCGCGGGATCAAGCAAGCATCAAGCAGTTGCAGTGAGAAACGGAGCGGACATGTCTGTTTTCTACAATTGTAGCTTCGAAGGTTACCAAGACACATTATACGCGCATTCTCTTCGACAATTCTACAAAAACTGTAACATTTACGGCACAGTTGATTTCATATTCGGCAATGCAGCAGCAATATTCCAAAACTGTAACATATATCCAAGACTCCCAATGCAAAATCAATTCAATGCAATTACAGCACAAGGAAGAACAGATCCTAATCAAAACACAGGGTTCTCTATATGGAATTGTTACATTGTAGCAGCTAAGTTTGCTAATTGGGGACAAGGTTCATATACTAGTAATAGGGTTACATGGAAAGGGTACCATCAAATTGATGGAAAAAATGCTGATGAATTCACAGTGTACAAATTTATTCAAGGTGACATGTGGTTGCCTATGACAGGAGTGCCTTTTAGAGCTGGGTTATAG 573 0.3822 MPQLKVPNIDCYFLFEAVTGKGFVAVNITFQNTAGSSKHQAVAVRNGADMSVFYNCSFEGYQDTLYAHSLRQFYKNCNIYGTVDFIFGNAAAIFQNCNIYPRLPMQNQFNAITAQGRTDPNQNTGFSIWNCYIVAAKFANWGQGSYTSNRVTWKGYHQIDGKNADEFTVYKFIQGDMWLPMTGVPFRAGL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme49290g00001 190 Pfam Pectinesterase 137 176 IPR000070 GO:0030599|GO:0042545
Trme49290g00001 190 Pfam Pectinesterase 17 136 IPR000070 GO:0030599|GO:0042545
Trme49290g00001 190 Gene3D - 137 190 IPR012334 -
Trme49290g00001 190 Gene3D - 10 136 IPR012334 -
Trme49290g00001 190 ProSitePatterns Pectinesterase signature 2. 79 88 IPR033131 -
Trme49290g00001 190 PANTHER PECTINESTERASE 136 180 - -
Trme49290g00001 190 SUPERFAMILY Pectin lyase-like 17 189 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme49290g00001 Trme-Chr49290 192 938 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme49290g00001 17 190 Carbohydrate Esterase AT4G02330 49.782 7.43e-71 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme49290g00001 K01051 - gmx:100810329 253.062