Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme492885g00001 ATGGCAGGGAGAGGAGGAGGAGGATCATGCGCTGCTTGTAAGCAGCGTCGCAAAAAGTGCAATCAGGAGTGTATAATGAAGCCGCATTTTCCGGCAGGAGATACTAGATGGGCTGATATCCATCAGGTTTTCAGTAATGAACGCCTTAAAGCAATGATGGAAGCAGTTGGTATTGAG 177 0.4746 MAGRGGGGSCAACKQRRKKCNQECIMKPHFPAGDTRWADIHQVFSNERLKAMMEAVGIE 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme492885g00001 59 Pfam Lateral organ boundaries (LOB) domain 9 56 IPR004883 -
Trme492885g00001 59 ProSiteProfiles LOB domain profile. 8 59 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme492885g00001 Trme-Chr492885 40 216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme492885g00001 4 58 AS2 family AT1G31320 35.714 1.18e-10 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme492885g00001 LOB 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme492885g00001 - - csin:114265865 53.9138