Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme49226g00001 ATGGCATCCGAGCTTCAATTGCCACCGGGCTTCAGATTCCATCCTACGGATGAGGAGCTCGTGATGCACTATCTCTGCCGGAAATGCACTTCCCAGCCTATCGCCGTTCCGATCATCGCCGAAATTGATCTCTATAAATATGATCCTTGGGACCTTCCTGGTNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAGGCCGAACCGGGCGGCTGGGTCTGGATATTGGAAGGCAACCGGGGCGGATAAACCCATAGGTCATCCTAAGCCGGTTGGGATCAAAAAAGCGTTGGTGTTTTACGCGGGTAAAGCACCAAAAGGTGATAAAACCAATTGGATCATGCATGAGTATCGTTTGGCTGACGTAGATCGCTCCATTCGCAAAAAGAACAGCTTAAGG 435 0.4253 MASELQLPPGFRFHPTDEELVMHYLCRKCTSQPIAVPIIAEIDLYKYDPWDLPGXXXXXXXXXXXXXXXXXXXXXXXRPNRAAGSGYWKATGADKPIGHPKPVGIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSIRKKNSLR 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme49226g00001 145 ProSiteProfiles NAC domain profile. 7 145 IPR003441 GO:0003677|GO:0006355
Trme49226g00001 145 Coils Coil 78 78 - -
Trme49226g00001 145 PANTHER NAC TRANSCRIPTION FACTOR 56 7 134 - -
Trme49226g00001 145 SUPERFAMILY NAC domain 3 133 IPR036093 GO:0003677|GO:0006355
Trme49226g00001 145 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Trme49226g00001 145 Gene3D NAC domain 16 144 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme49226g00001 Trme-Chr49226 26 562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme49226g00001 1 145 NAC Transcription Factor Family AT1G01720 76.712 2.12e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme49226g00001 NAM 3.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme49226g00001 - - gmx:100805768 243.817