Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4920g00001 ATGACTCCTCAGAAATCAGACTCCGTCGTCGTTTACCTTCACGGTAACCTCGATTTGAAAATCGTTGAGGCTCGTTATCTACCAAACATGGACATGTTTTCAGAGCGTTTTCGAAGATTCTTCTCCGCTATTAACAAATGCAGCAATTCAATCAGTGGTAAAAACAAAAACCATCCGCCACGTCATCATCACCATAAGATAATCACCAGTGATCCATACGTAACCGTTTGTCTCGCCGGTGCTACGGTGGCGCGTACGCGCGTTATTTCAAACTCGCAATCACCGAAATGGGAAGAGCATTTTAAGATTCCTCTGGCTCATCCTGTTTCTCAGGTTGAATTCTACGTGAAAGATAATGACATGTTTGGCGCTGAATTGATCGGAATCGCAACCGTTTCTGCTAAGAGGATCTTATCAGGTGAATATATCAGTGATTGGTTTCCGATTATAGGTTCTGGTGGTAAACCTCCAAAACCTGATTGCGCGGTTTTTATTGAGATGAAATTCACCAGGTGTGATGATAATCCTCTTTACCGTTCCGGCATTGCGCCTGATCTGGAGAGGTTTTCGGTTCGGGATTCGTATTTTCCTGTTCGGAAAGGAGGATCGGTGACGCTGTATCAAGATGCACACGTTCCGGATTCGATGTTGCCGGGGATTGAATTGGATGATGGTGTTGAATTTCAGCAGGGGAAATGTTGGGAAGATATTTGTCACGCAATATTGGAAGCACATCATATGGTGTATATTGTTGGTTGGTCAATTTACCATAAGGTGAAGCTTGTTAGAGAACCAACAAAACCATTACCAAGTGGTGGAAATTTGAATTTGGGGGAATTACTCAAGTATAAATCACAAGAAGGTTTGCGAGTTTTACTGTTGGTTTGGGATGATAAAACTTCACACAGCAAATTTTTCATCAACACGAATGGAATAATGCAGACTCATGATGAAGAAACTCGAAAGTTTTTCAAGCATTCTTCAGTTACATGTGTGTTATCACCACGATATGCCAGCA 1018 0.4214 MTPQKSDSVVVYLHGNLDLKIVEARYLPNMDMFSERFRRFFSAINKCSNSISGKNKNHPPRHHHHKIITSDPYVTVCLAGATVARTRVISNSQSPKWEEHFKIPLAHPVSQVEFYVKDNDMFGAELIGIATVSAKRILSGEYISDWFPIIGSGGKPPKPDCAVFIEMKFTRCDDNPLYRSGIAPDLERFSVRDSYFPVRKGGSVTLYQDAHVPDSMLPGIELDDGVEFQQGKCWEDICHAILEAHHMVYIVGWSIYHKVKLVREPTKPLPSGGNLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTNGIMQTHDEETRKFFKHSSVTCVLSPRYAS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4920g00001 339 Gene3D C2 domain 10 169 IPR035892 -
Trme4920g00001 339 SUPERFAMILY Phospholipase D/nuclease 192 334 - -
Trme4920g00001 339 CDD C2_plant_PLD 10 170 - -
Trme4920g00001 339 SMART C2_3c 16 146 IPR000008 -
Trme4920g00001 339 PANTHER PHOSPHOLIPASE D 8 338 IPR015679 -
Trme4920g00001 339 ProSiteProfiles C2 domain profile. 1 147 IPR000008 -
Trme4920g00001 339 Pfam C2 domain 15 149 IPR000008 -
Trme4920g00001 339 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 153 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4920g00001 Trme-Chr4920 246 2135 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4920g00001 4 339 Phospholipase D Gene Family (Wang group) AT4G35790 61.561 1.84e-145 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4920g00001 K01115 - gmx:100795859 568.926