Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4906g00001 ATGTTAAGGGGGCGTGATTCTGTACCTGAAAATTCATCTGTGAATCAATTCGTCTACGAGGTTATACAATTTTTGTCACGCCAAAAGCAGTCAAAGAAGTATATACTTGTTCATTGTACACATGGGCATAATCGTACGGGATACATGATTATCCATTATCTAATGCGTGCTATGTCAATGTCTGTTACTCAG 192 0.3802 MLRGRDSVPENSSVNQFVYEVIQFLSRQKQSKKYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQ 64
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4906g00001 64 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 15 64 IPR000387 GO:0016311|GO:0016791
Trme4906g00001 64 ProSitePatterns Tyrosine specific protein phosphatases active site. 37 47 IPR016130 GO:0016311|GO:0016791
Trme4906g00001 64 PANTHER MRNA-CAPPING ENZYME 3 64 - -
Trme4906g00001 64 Gene3D Protein tyrosine phosphatase superfamily 2 64 IPR029021 -
Trme4906g00001 64 Pfam Dual specificity phosphatase, catalytic domain 11 63 IPR000340 GO:0008138|GO:0016311
Trme4906g00001 64 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 5 63 IPR029021 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4906g00001 3 64 Protein tyrosine phosphatase (PTP) family AT5G01290 71.429 1.68e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4906g00001 K13917 - gmx:100776633 122.094