Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48993g00001 ATGGACACTTTAAAGGCCACTGCAAACGAATTCTTCGCCACATTCATCTTTGTCTTTGCTGCCACAGGCTCTCGAATAGCTGTAAACAAAATCACCGGCGACGCTGTGTTCGGTCTCATTGCCACCGCAATCGCTCAGGCGTTTGCCCTCACTGCCGCGGTTTCTGTTGGAATCAAGTACACCGATATGAATCCGTACACCTGTTGTGGGCACCTNNNNNNNNNNANNNNNNNNNNANNNNNNNTAGGCGGAAATTTACACATCTTTCGTGCCTTAATCTACTGGATTGCTCAGCTCGTTGCCTCCATCGCCGCCTGCGGGCTCCTCGTGTTCTTTCCCGGGGGAGAGGTACGTCTGTCACTACCATGGCTGATTACTTTTTAG 384 0.474 MDTLKATANEFFATFIFVFAATGSRIAVNKITGDAVFGLIATAIAQAFALTAAVSVGIKYTDMNPYTCCGHLXXXXXXXXXXGGNLHIFRALIYWIAQLVASIAACGLLVFFPGGEVRLSLPWLITF 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48993g00001 127 SUPERFAMILY Aquaporin-like 3 120 IPR023271 -
Trme48993g00001 127 Gene3D Glycerol uptake facilitator protein. 1 121 IPR023271 -
Trme48993g00001 127 Pfam Major intrinsic protein 2 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme48993g00001 127 PRINTS Major intrinsic protein family signature 5 24 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme48993g00001 127 PRINTS Major intrinsic protein family signature 90 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme48993g00001 127 PANTHER AQUAPORIN-8 2 115 IPR034294 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48993g00001 2 116 Major Intrinsic Protein MIP AT3G26520 44.915 3.93e-22 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48993g00001 K09873 - psom:113309001 87.8113