Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48980g00001 ATGCCATATTTTTCTAATTTGCAGGCATTGCTTCATGTTATATATTGGGACTCATTGCCTGACATGCAAGAGCTTACTGGGATTAACTCAAAATGGGCAACTACCTTGATGGCTCAGCATCTGCTAGCAGCAGCTGATCGGTATGGCTTAGATAGACTTAGGCTGATGTGTGAAGCAAGTCTATGTGAAGATGTTGCAATAAACACCGTGGCTACAACTTTAGCTTTGGCAGAGCAGCACCATTGTTTCCAGCTGAAAGCAGTCTGTCTGAAATTCATTGCAAGGCCTGAAAATCTCAGAG 301 0.4319 MPYFSNLQALLHVIYWDSLPDMQELTGINSKWATTLMAQHLLAAADRYGLDRLRLMCEASLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIARPENLR 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48980g00001 100 SUPERFAMILY POZ domain 6 64 IPR011333 -
Trme48980g00001 100 Gene3D - 59 99 - -
Trme48980g00001 100 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 8 92 IPR045005 GO:0016567
Trme48980g00001 100 Gene3D Potassium Channel Kv1.1; Chain A 3 58 IPR011333 -
Trme48980g00001 100 Pfam BTB/POZ domain 5 63 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48980g00001 Trme-Chr48980 11 311 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trme48980g00001 BTB 2.3e-05 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48980g00001 K10523 - gmx:100799666 184.111