Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme489705g00001 TTCAACACGGCCGAGGAAGCCGCTAGAGCTTATGATAGAGCTGCTTATGATATGAGAGGTTCAGCTGCAATCCTTAATTTTCCAAATGAATATAATATGCCAGTTAGTGCCGGCTTTGGTGCCACTTCTGCTTCATCATCTTCATCTTCTTCGTCTTCAAGGAATGCAAATGCCGGAAGCGGAGGACGACAAGTGTTTGAGTTTGAGTACTTGGATGATAAGTTGTTGGATGAGCTTCTTGATTTTGAAGAGAAGAAAAAATAA 264 0.4167 FNTAEEAARAYDRAAYDMRGSAAILNFPNEYNMPVSAGFGATSASSSSSSSSSRNANAGSGGRQVFEFEYLDDKLLDELLDFEEKKK 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme489705g00001 87 MobiDBLite consensus disorder prediction 38 61 - -
Trme489705g00001 87 SUPERFAMILY DNA-binding domain 1 29 IPR016177 GO:0003677
Trme489705g00001 87 Gene3D AP2/ERF domain 1 29 IPR036955 GO:0003700|GO:0006355
Trme489705g00001 87 ProSiteProfiles AP2/ERF domain profile. 1 28 IPR001471 GO:0003700|GO:0006355
Trme489705g00001 87 PANTHER DNA-BINDING DOMAIN 1 83 IPR044808 GO:0003700|GO:0009873
Trme489705g00001 87 MobiDBLite consensus disorder prediction 38 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme489705g00001 Trme-Chr489705 21 284 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme489705g00001 1 87 AP2-EREBP Transcription Factor Family AT3G23230 54.737 7.51e-23 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme489705g00001 - - vvo:131618321 70.8626