Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48946g00001 AATGGATATGAATACAAGTTTATTTGTGAAATTGTCAAATATGTATCCAACAAGATTAATCGTGTTCCTTTAGATGTTGTCGGTTACGCCGTTGGCTTGAAGAGTCGAGTTCTGAAAGTAAATTCACTTCTAAAATTTGGATTTAATGATGAAGTCAAGATGCTAGGGATCTATGGACTTGGAGGAATGGGTAAGACAACTCTTGCAAAAGCAGTTTATAATATCATTGCTGATCAATTTGAATGTGTGTGTTTTCTTCACAATGTGAGAGAAAACTCATCAAAACATGGTTTAGAGTATCTCCAAAAGGATCTTCTTTCCAAAACTGTTGGATTGGACATTAAATTAGATGATATTAGTGAGGGAATTCCAATCATTAGGAAAAGGCTACATGGGAAGAAGGTTTTATTGATCCTCGATGACATTGACCAAATGAAGCAGCTGCAGGCTTTGGCTGGAGGGATTGATTGGTTTGATGCTGGCAGTAGAGTGATCATTACCACTCGAGACAAAAACTTGTTAGCAAGTCATGGGATTGAAGTGACATATGAAATAAATGGGTTAAATAAGGAAGAAGCTCTTGAAATGCTTAGATGGAAG 600 0.365 NGYEYKFICEIVKYVSNKINRVPLDVVGYAVGLKSRVLKVNSLLKFGFNDEVKMLGIYGLGGMGKTTLAKAVYNIIADQFECVCFLHNVRENSSKHGLEYLQKDLLSKTVGLDIKLDDISEGIPIIRKRLHGKKVLLILDDIDQMKQLQALAGGIDWFDAGSRVIITTRDKNLLASHGIEVTYEINGLNKEEALEMLRWK 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48946g00001 200 Gene3D - 12 181 IPR027417 -
Trme48946g00001 200 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 200 IPR044974 GO:0006952
Trme48946g00001 200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 199 IPR027417 -
Trme48946g00001 200 PRINTS Disease resistance protein signature 54 69 - -
Trme48946g00001 200 PRINTS Disease resistance protein signature 129 143 - -
Trme48946g00001 200 Pfam NB-ARC domain 45 198 IPR002182 GO:0043531
Trme48946g00001 200 SMART AAA_5 51 188 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48946g00001 Trme-Chr48946 1 600 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48946g00001 31 197 WRKY Transcription Factor Family AT5G45050 31.548 3.65e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48946g00001 - - tpra:123910163 303.138